Evidence map›Paper›PMID 25398938›Full record

ArticleBlood2015

Mutant WT1 is associated with DNA hypermethylation of PRC2 targets in AML and responds to EZH2 inhibition.

Subarna Sinha, Daniel Thomas, Linda Yu, Andrew J Gentles, Namyoung Jung, M Ryan Corces-Zimmerman, Steven M Chan, Andreas Reinisch, Andrew P Feinberg, David L Dill and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 55 citations in OpenAlex.

  1. Trial
  2. Article
  3. Hypomethylation ofFrontiers in immunology · 2025
    Article
  4. Review
  5. Review
  6. Article
  7. Tumor suppressor function ofHaematologica · 2022
    Article
  8. Article
  9. Frontiers in oncology · 2021
    Article
  10. Review
  11. RNA-Binding Proteins in Acute Leukemias.International journal of molecular sciences · 2020
    Review
  12. Article
  13. Review
  14. Review
  15. MutatedJournal of oncology · 2019
    Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Molecular therapy for acute myeloid leukaemia.Nature reviews. Clinical oncology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Subarna SinhaDepartment of Computer Science, Stanford University, Stanford, CA;
Daniel ThomasDivision of Hematology, Department of Medicine, Cancer Institute, and Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA;
Linda YuDivision of Hematology, Department of Medicine, Cancer Institute, and Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA;
Andrew J GentlesDepartment of Radiology, Stanford University, Stanford, CA; and.
Namyoung JungCenter for Epigenetics, Institute for Basic Biomedical Science, Johns Hopkins School of Medicine, Baltimore, MD.
M Ryan Corces-ZimmermanDivision of Hematology, Department of Medicine, Cancer Institute, and Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA;
Steven M ChanDivision of Hematology, Department of Medicine, Cancer Institute, and Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA;
Andreas ReinischDivision of Hematology, Department of Medicine, Cancer Institute, and Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA;
Andrew P FeinbergCenter for Epigenetics, Institute for Basic Biomedical Science, Johns Hopkins School of Medicine, Baltimore, MD.
David L DillDepartment of Computer Science, Stanford University, Stanford, CA;
Ravindra MajetiDivision of Hematology, Department of Medicine, Cancer Institute, and Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA;
Stanford University · USCancer Institute (WIA) · INJohns Hopkins University · US

Funding

MODELING THE ROLE OF PROGRESSION IN FOLLICULAR LYMPHOMAU54CA149145 · NCI · STANFORD UNIVERSITY · PI PLEVRITIS, SYLVIA KATINA · 2010 to 2014
$12.1M
MOLECULAR PATHOLOGY OF WILMS TUMOR RELATED GENES 11PR01CA054358 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ANDREW P. FEINBERG · 1991 to 2026
$5.5M
Pre-Leukemic Hematopoietic Stem Cells and Clonal Evolution in Human AMLR01CA188055 · NCI · STANFORD UNIVERSITY · PI MAJETI, RAVINDRA · 2014 to 2018
$1.6M
Austrian Science Fund FWF J 3358NCI NIH HHS R01 CA054358NCI NIH HHS R01 CA188055NCI NIH HHS U54 CA149145NCI NIH HHS U54CA149145
6 · The paper itself

Abstract

Acute myeloid leukemia (AML) is associated with deregulation of DNA methylation; however, many cases do not bear mutations in known regulators of cytosine guanine dinucleotide (CpG) methylation. We found that mutations in WT1, IDH2, and CEBPA were strongly linked to DNA hypermethylation in AML using a novel integrative analysis of The Cancer Genome Atlas data based on Boolean implications, if-then rules that identify all individual CpG sites that are hypermethylated in the presence of a mutation. Introduction of mutant WT1 (WT1mut) into wild-type AML cells induced DNA hypermethylation, confirming mutant WT1 to be causally associated with DNA hypermethylation. Methylated genes in WT1mut primary patient samples were highly enriched for polycomb repressor complex 2 (PRC2) targets, implicating PRC2 dysregulation in WT1mut leukemogenesis. We found that PRC2 target genes were aberrantly repressed in WT1mut AML, and that expression of mutant WT1 in CD34(+) cord blood cells induced myeloid differentiation block. Treatment of WT1mut AML cells with short hairpin RNA or pharmacologic PRC2/enhancer of zeste homolog 2 (EZH2) inhibitors promoted myeloid differentiation, suggesting EZH2 inhibitors may be active in this AML subtype. Our results highlight a strong association between mutant WT1 and DNA hypermethylation in AML and demonstrate that Boolean implications can be used to decipher mutation-specific methylation patterns that may lead to therapeutic insights.

Indexed as

Genes, Wilms TumorDNA MethylationEnhancer of Zeste Homolog 2 ProteinGene Expression ProfilingGene Expression Regulation, LeukemicHumansLeukemia, Myeloid, AcuteMutationOligonucleotide Array Sequence AnalysisPolycomb Repressive Complex 2Enhancer of Zeste Homolog 2 ProteinEZH2 protein, humanPolycomb Repressive Complex 2

Identifiers

PMID25398938
PMCPMC4287638
OpenAlexW2150261485

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.