Evidence map›Paper›PMID 25398883›Full record

ArticleThe Journal of biological chemistry2015

Identification of a second substrate-binding site in solute-sodium symporters.

Zheng Li, Ashley S E Lee, Susanne Bracher, Heinrich Jung, Aviv Paz, Jay P Kumar, Jeff Abramson, Matthias Quick, Lei Shi

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Allosteric regulation of mammalian NaNature structural & molecular biology · 2020
    Article
  5. The allosteric mechanism of substrate-specific transport in SLC6 is mediated by a volumetric sensor.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  6. The LeuT-fold neurotransmitter:sodium symporter MhsT has two substrate sites.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Stochastic steps in secondary active sugar transport.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Zheng LiFrom the Department of Physiology and Biophysics, Weill Cornell Medical College, Cornell University, New York, New York 10065.
Ashley S E Leethe Center for Molecular Recognition and Department of Psychiatry, Columbia University College of Physicians and Surgeons, New York, New York 10032.
Susanne Bracherthe Ludwig Maximilian University of Munich, Biocentre, Microbiology, Grosshaderner Strasse 2-4, Martinsried, D-82152, Germany.
Heinrich Jungthe Ludwig Maximilian University of Munich, Biocentre, Microbiology, Grosshaderner Strasse 2-4, Martinsried, D-82152, Germany.
Aviv Pazthe Department of Physiology, UCLA, Los Angeles, California 90095.
Jay P Kumarthe Institute for Stem Cell Biology and Regenerative Medicine, NCBS Campus, GKVK Post, Bellary Road, Bangalore-560065, Karnataka, India.
Jeff Abramsonthe Department of Physiology, UCLA, Los Angeles, California 90095, the Institute for Stem Cell Biology and Regenerative Medicine, NCBS Campus, GKVK Post, Bellary Road, Bangalore-560065, Karnataka, India.
Matthias Quickthe Center for Molecular Recognition and Department of Psychiatry, Columbia University College of Physicians and Surgeons, New York, New York 10032, the Division of Molecular Therapeutics, New York State Psychiatric Institute, New York, New York 10032, and mq2102@columbia.edu.
Lei ShiFrom the Department of Physiology and Biophysics, Weill Cornell Medical College, Cornell University, New York, New York 10065, the Institute for Computational Biomedicine, Weill Cornell Medical College, Cornell University, New York, New York 10021 les2007@med.cornell.edu.
Columbia University · USCornell University · USLudwig-Maximilians-Universität München · DEUniversity of California, Los Angeles · USInstitute for Stem Cell Biology and Regenerative Medicine · IN

Funding

Structural basis for the functions of dopamine receptors, neurotransmitter transporters, and sigma 1 receptorZIADA000606 · NIDA · NATIONAL INSTITUTE ON DRUG ABUSE · PI SHI, LEI · 2015 to 2025
$20.5M
Structures of sodium glucose transporters by cryo electron microscopyR01GM078844 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ABRAMSON, JEFFREY S · 2006 to 2018
$5.3M
Molecular mechanisms of bacterial homologs of neurotransmitter:sodium symportersR01DA017293 · NIDA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI JAVITCH, JONATHAN A · 2003 to 2013
$4.9M
The Neurotransmitter: Sodium Symporter Permeation PathwayR00DA023694 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI SHI, LEI · 2010 to 2012
$725k
The Neurotransmitter: Sodium Symporter Permeation PathwayK99DA023694 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI SHI, LEI · 2008 to 2009
$180k
NIDA NIH HHS DA017293NIDA NIH HHS DA023694NIDA NIH HHS K99 DA023694NIDA NIH HHS R00 DA023694NIDA NIH HHS R01 DA017293NIGMS NIH HHS GM078844NIGMS NIH HHS R01 GM078844
6 · The paper itself

Abstract

The structure of the sodium/galactose transporter (vSGLT), a solute-sodium symporter (SSS) from Vibrio parahaemolyticus, shares a common structural fold with LeuT of the neurotransmitter-sodium symporter family. Structural alignments between LeuT and vSGLT reveal that the crystallographically identified galactose-binding site in vSGLT is located in a more extracellular location relative to the central substrate-binding site (S1) in LeuT. Our computational analyses suggest the existence of an additional galactose-binding site in vSGLT that aligns to the S1 site of LeuT. Radiolabeled galactose saturation binding experiments indicate that, like LeuT, vSGLT can simultaneously bind two substrate molecules under equilibrium conditions. Mutating key residues in the individual substrate-binding sites reduced the molar substrate-to-protein binding stoichiometry to ~1. In addition, the related and more experimentally tractable SSS member PutP (the Na(+)/proline transporter) also exhibits a binding stoichiometry of 2. Targeting residues in the proposed sites with mutations results in the reduction of the binding stoichiometry and is accompanied by severely impaired translocation of proline. Our data suggest that substrate transport by SSS members requires both substrate-binding sites, thereby implying that SSSs and neurotransmitter-sodium symporters share common mechanistic elements in substrate transport.

Indexed as

Amino Acid SequenceAmino Acid Transport Systems, NeutralBinding SitesBiological TransportEscherichia coliEscherichia coli ProteinsGalactoseKineticsMolecular Docking SimulationMolecular Dynamics SimulationMolecular Sequence DataPlasma Membrane Neurotransmitter Transport ProteinsProtein BindingProtein FoldingProtein Structure, SecondaryProtein Structure, TertiaryAmino Acid Transport Systems, NeutralEscherichia coli ProteinsGalactosePlasma Membrane Neurotransmitter Transport ProteinsPutP protein, E coliRecombinant ProteinsSodiumSodium-Glucose Transport ProteinsSymportersAmino Acid TransportComputational BiologyEquilibrium BindingGalactoseMembrane TransportMolecular DynamicsScintillation Proximity AssaySolute-Sodium SymporterStructural AlignmentTransporter

Identifiers

PMID25398883
PMCPMC4281715
OpenAlexW2063587275

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.