Evidence map›Paper›PMID 25398880›Full record

ArticleThe Journal of biological chemistry2015

Pre-steady-state kinetic and structural analysis of interaction of methionine γ-lyase from Citrobacter freundii with inhibitors.

Nikita A Kuznetsov, Nicolai G Faleev, Alexandra A Kuznetsova, Elena A Morozova, Svetlana V Revtovich, Natalya V Anufrieva, Alexei D Nikulin, Olga S Fedorova, Tatyana V Demidkina

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
3.0field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Nikita A KuznetsovFrom the Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Novosibirsk 630090, the Department of Natural Sciences, Novosibirsk State University, Novosibirsk 630090.
Nicolai G FaleevNesmeyanov Institute of Organoelement Compounds and.
Alexandra A KuznetsovaFrom the Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Novosibirsk 630090, the Department of Natural Sciences, Novosibirsk State University, Novosibirsk 630090.
Elena A MorozovaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, and.
Svetlana V RevtovichEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, and.
Natalya V AnufrievaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, and.
Alexei D Nikulinthe Institute of Protein Research, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia.
Olga S FedorovaFrom the Institute of Chemical Biology and Fundamental Medicine, Siberian Branch of the Russian Academy of Sciences, Novosibirsk 630090, the Department of Natural Sciences, Novosibirsk State University, Novosibirsk 630090, fedorova@niboch.nsc.ru.
Tatyana V DemidkinaEngelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow 119991, and tvd@eimb.ru.
Engelhardt Institute of Molecular Biology · RUA. N. Nesmeyanov Institute of Organoelement Compounds · RUNovosibirsk State University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Methionine γ-lyase (MGL) catalyzes the γ-elimination of l-methionine and its derivatives as well as the β-elimination of l-cysteine and its analogs. These reactions yield α-keto acids and thiols. The mechanism of chemical conversion of amino acids includes numerous reaction intermediates. The detailed analysis of MGL interaction with glycine, l-alanine, l-norvaline, and l-cycloserine was performed by pre-steady-state stopped-flow kinetics. The structure of side chains of the amino acids is important both for their binding with enzyme and for the stability of the external aldimine and ketimine intermediates. X-ray structure of the MGL·l-cycloserine complex has been solved at 1.6 Å resolution. The structure models the ketimine intermediate of physiological reaction. The results elucidate the mechanisms of the intermediate interconversion at the stages of external aldimine and ketimine formation.

Indexed as

AlanineBacterial ProteinsCarbon-Sulfur LyasesCatalytic DomainCitrobacter freundiiCrystallography, X-RayCycloserineCysteineEnzyme InhibitorsEscherichia coliGene ExpressionGlycineIminesKineticsModels, ChemicalPyridoxal PhosphateAlanineBacterial ProteinsCarbon-Sulfur LyasesCycloserineCysteineEnzyme InhibitorsGlycineIminesL-methionine gamma-lyasenorvalinePyridoxal PhosphateRecombinant ProteinsValineEnzyme InhibitorEnzyme StructureMethionine γ-LyasePre-steady-state KineticsPyridoxal PhosphateStructure of Pyridoxal 5′-Phosphate-Cycloserine DerivativeSubstrate Specificity

Identifiers

PMID25398880
PMCPMC4281767
OpenAlexW2048188952

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.