Evidence map›Paper›PMID 25398855›Full record

ArticleApplied and environmental microbiology2015

A previously uncharacterized, nonphotosynthetic member of the Chromatiaceae is the primary CO2-fixing constituent in a self-regenerating biocathode.

Zheng Wang, Dagmar H Leary, Anthony P Malanoski, Robert W Li, W Judson Hervey, Brian J Eddie, Gabrielle S Tender, Shelley G Yanosky, Gary J Vora, Leonard M Tender and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
7.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 88 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Electron transfer of extremophiles in bioelectrochemical systems.Extremophiles : life under extreme conditions · 2022
    Review
  5. Review
  6. Microbial Electrochemical Technologies for Sustainable Nitrogen Removal in Marine and Coastal Environments.International journal of environmental research and public health · 2022
    Review
  7. Bacteria Associated WithFrontiers in microbiology · 2022
    Article
  8. Biofilm · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Complete Genome Sequence ofMicrobiology resource announcements · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Enrichment ofFrontiers in microbiology · 2019
    Article
  19. Article
  20. Characterizing Electron Transport through Living Biofilms.Journal of visualized experiments : JoVE · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Zheng WangCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA.
Dagmar H LearyCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA.
Anthony P MalanoskiCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA.
Robert W LiU.S. Department of Agriculture, Agriculture Research Service, Animal Genomics and Improvement Laboratory, Beltsville, Maryland, USA.
W Judson HerveyCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA.
Brian J EddieCalifornia Institute of Technology, Pasadena, California, USA.
Gabrielle S TenderCalifornia Institute of Technology, Pasadena, California, USA.
Shelley G YanoskyAmerican Society for Engineering Education, Washington, DC, USA.
Gary J VoraCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA.
Leonard M TenderCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA.
Baochuan LinCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA.
Sarah M Strycharz-GlavenCenter for Bio/Molecular Science and Engineering, Naval Research Laboratory, Washington, DC, USA sarah.glaven@nrl.navy.mil.
United States Naval Research Laboratory · USNaval Research Laboratory Center for Bio/Molecular Science and EngineeringCalifornia Institute of Technology · USAmerican Society For Engineering Education · USUnited States Department of Agriculture · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biocathode extracellular electron transfer (EET) may be exploited for biotechnology applications, including microbially mediated O2 reduction in microbial fuel cells and microbial electrosynthesis. However, biocathode mechanistic studies needed to improve or engineer functionality have been limited to a few select species that form sparse, homogeneous biofilms characterized by little or no growth. Attempts to cultivate isolates from biocathode environmental enrichments often fail due to a lack of some advantage provided by life in a consortium, highlighting the need to study and understand biocathode consortia in situ. Here, we present metagenomic and metaproteomic characterization of a previously described biocathode biofilm (+310 mV versus a standard hydrogen electrode [SHE]) enriched from seawater, reducing O2, and presumably fixing CO2 for biomass generation. Metagenomics identified 16 distinct cluster genomes, 15 of which could be assigned at the family or genus level and whose abundance was roughly divided between Alpha- and Gammaproteobacteria. A total of 644 proteins were identified from shotgun metaproteomics and have been deposited in the the ProteomeXchange with identifier PXD001045. Cluster genomes were used to assign the taxonomic identities of 599 proteins, with Marinobacter, Chromatiaceae, and Labrenzia the most represented. RubisCO and phosphoribulokinase, along with 9 other Calvin-Benson-Bassham cycle proteins, were identified from Chromatiaceae. In addition, proteins similar to those predicted for iron oxidation pathways of known iron-oxidizing bacteria were observed for Chromatiaceae. These findings represent the first description of putative EET and CO2 fixation mechanisms for a self-regenerating, self-sustaining multispecies biocathode, providing potential targets for functional engineering, as well as new insights into biocathode EET pathways using proteomics.

Indexed as

Bioelectric Energy SourcesBiotaCarbon DioxideChromatiaceaeDNA, BacterialElectrodesMetagenomeMicrobial ConsortiaMolecular Sequence DataProteomeSequence Analysis, DNACarbon DioxideDNA, BacterialProteome

Identifiers

PMID25398855
PMCPMC4277585
OpenAlexW2146843398

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.