Evidence map›Paper›PMID 25398792›Full record

ArticleGenetics2015

Allelic variation, aneuploidy, and nongenetic mechanisms suppress a monogenic trait in yeast.

Amy Sirr, Gareth A Cromie, Eric W Jeffery, Teresa L Gilbert, Catherine L Ludlow, Adrian C Scott, Aimée M Dudley

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Natural Variation inG3 (Bethesda, Md.) · 2018
    Article
  14. The Stress-Inducible PeroxidaseG3 (Bethesda, Md.) · 2017
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Amy SirrPacific Northwest Diabetes Research Institute, Seattle, Washington 98122.
Gareth A CromiePacific Northwest Diabetes Research Institute, Seattle, Washington 98122.
Eric W JefferyPacific Northwest Diabetes Research Institute, Seattle, Washington 98122.
Teresa L GilbertPacific Northwest Diabetes Research Institute, Seattle, Washington 98122.
Catherine L LudlowPacific Northwest Diabetes Research Institute, Seattle, Washington 98122.
Adrian C ScottPacific Northwest Diabetes Research Institute, Seattle, Washington 98122.
Aimée M DudleyPacific Northwest Diabetes Research Institute, Seattle, Washington 98122 aimee.dudley@gmail.com.
Pacific Northwest Diabetes Research Institute · US

Funding

Computation and functional significance of multi-phenotype genetic interaction maR01GM089978 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI DUDLEY, AIMEE M, SEGRE, DANIEL · 2010 to 2014
$2.3M
NIGMS NIH HHS R01 GM089978
6 · The paper itself

Abstract

Clinically relevant features of monogenic diseases, including severity of symptoms and age of onset, can vary widely in response to environmental differences as well as to the presence of genetic modifiers affecting the trait's penetrance and expressivity. While a better understanding of modifier loci could lead to treatments for Mendelian diseases, the rarity of individuals harboring both a disease-causing allele and a modifying genotype hinders their study in human populations. We examined the genetic architecture of monogenic trait modifiers using a well-characterized yeast model of the human Mendelian disease classic galactosemia. Yeast strains with loss-of-function mutations in the yeast ortholog (GAL7) of the human disease gene (GALT) fail to grow in the presence of even small amounts of galactose due to accumulation of the same toxic intermediates that poison human cells. To isolate and individually genotype large numbers of the very rare (∼0.1%) galactose-tolerant recombinant progeny from a cross between two gal7Δ parents, we developed a new method, called "FACS-QTL." FACS-QTL improves upon the currently used approaches of bulk segregant analysis and extreme QTL mapping by requiring less genome engineering and strain manipulation as well as maintaining individual genotype information. Our results identified multiple distinct solutions by which the monogenic trait could be suppressed, including genetic and nongenetic mechanisms as well as frequent aneuploidy. Taken together, our results imply that the modifiers of monogenic traits are likely to be genetically complex and heterogeneous.

Indexed as

AneuploidyGenes, ModifierGenetic VariationQuantitative Trait LociAllelesChromosome MappingGalactoseGalectinsSaccharomyces cerevisiaeGalactoseGalectinsgalactosegalactosemia, aneuploidygenetic modifierQTL mapping

Identifiers

PMID25398792
PMCPMC4286688
OpenAlexW2147549054

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.