Evidence map›Paper›PMID 25398498›Full record

ArticleThe Plant cell2014

The Arabidopsis EDR1 protein kinase negatively regulates the ATL1 E3 ubiquitin ligase to suppress cell death.

Irene Serrano, Yangnan Gu, Dong Qi, Ullrich Dubiella, Roger W Innes

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
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  3. Functional Characterization ofPlants (Basel, Switzerland) · 2026
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  4. Response ofPlants (Basel, Switzerland) · 2024
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  8. Review
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  10. Review
  11. Article
  12. Article
  13. Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Making watercress (Frontiers in plant science · 2023
    Article
  15. Article
  16. Article
  17. Ubiquitination of Receptorsomes, Frontline of Plant Immunity.International journal of molecular sciences · 2022
    Review
  18. CRISPR/Cas9 basedFrontiers in plant science · 2022
    Article
  19. Nuclear Localization of HopA1Plants (Basel, Switzerland) · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Irene SerranoDepartment of Biology, Indiana University, Bloomington, Indiana 47405.
Yangnan GuDepartment of Biology, Indiana University, Bloomington, Indiana 47405.
Dong QiDepartment of Biology, Indiana University, Bloomington, Indiana 47405.
Ullrich DubiellaDepartment of Biology, Indiana University, Bloomington, Indiana 47405.
Roger W InnesDepartment of Biology, Indiana University, Bloomington, Indiana 47405 rinnes@indiana.edu.ORCID http://orcid.org/0000-0001-9634-1413
Indiana University Bloomington · US

Funding

Programmed Cell Death and Disease Resistance in ArabidopsisR01GM063761 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI INNES, ROGER W. · 2002 to 2013
$3.5M
NIGMS NIH HHS R01 GM063761
6 · The paper itself

Abstract

Loss-of-function mutations in the Arabidopsis thaliana ENHANCED DISEASE RESISTANCE1 (EDR1) gene confer enhanced programmed cell death under a variety of abiotic and biotic stress conditions. All edr1 mutant phenotypes can be suppressed by missense mutations in the KEEP ON GOING gene, which encodes a trans-Golgi network/early endosome (TGN/EE)-localized E3 ubiquitin ligase. Here, we report that EDR1 interacts with a second E3 ubiquitin ligase, ARABIDOPSIS TOXICOS EN LEVADURA1 (ATL1), and negatively regulates its activity. Overexpression of ATL1 in transgenic Arabidopsis induced severe growth inhibition and patches of cell death, while transient overexpression in Nicotiana benthamiana leaves induced cell death and tissue collapse. The E3 ligase activity of ATL1 was required for both of these processes. Importantly, we found that ATL1 interacts with EDR1 on TGN/EE vesicles and that EDR1 suppresses ATL1-mediated cell death in N. benthamiana and Arabidopsis. Lastly, knockdown of ATL1 expression suppressed cell death phenotypes associated with the edr1 mutant and made Arabidopsis hypersusceptible to powdery mildew infection. Taken together, our data indicate that ATL1 is a positive regulator of programmed cell death and EDR1 negatively regulates ATL1 activity at the TGN/EE and thus controls stress responses initiated by ATL1-mediated ubiquitination events.

Indexed as

Gene Expression Regulation, PlantAmino Acid SequenceArabidopsisArabidopsis ProteinsAscomycotaCell DeathEndosomesModels, BiologicalMolecular Sequence DataMutationPhenotypePlant DiseasesPlant ImmunityPlant LeavesPlants, Genetically ModifiedSequence AlignmentArabidopsis ProteinsATL1 protein, ArabidopsisEDR1 protein, ArabidopsisUbiquitin-Protein Ligases

Identifiers

PMID25398498
PMCPMC4277226
OpenAlexW2116804541

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.