Evidence map›Paper›PMID 25398081›Full record

ArticlePloS one2014

Complete chloroplast genome sequence of Omani lime (Citrus aurantiifolia) and comparative analysis within the rosids.

Huei-Jiun Su, Saskia A Hogenhout, Abdullah M Al-Sadi, Chih-Horng Kuo

Abstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Phylogenetic analysis of nineFrontiers in plant science · 2025
    Article
  2. The complete plastid genome ofMitochondrial DNA. Part B, Resources · 2025
    Article
  3. Article
  4. Article
  5. The complete chloroplast genome of 'biasong' (Mitochondrial DNA. Part B, Resources · 2022
    Article
  6. Frontiers in plant science · 2022
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Plastid genomes ofJournal of genetics · 2020
    Article
  12. Complete Chloroplast Genome Sequences ofMolecules (Basel, Switzerland) · 2019
    Article
  13. Analyzing and Characterizing the Chloroplast Genome ofBioMed research international · 2019
    Article
  14. Article
  15. Sequencing and Analysis ofMolecules (Basel, Switzerland) · 2018
    Article
  16. Article
  17. Complete plastome sequencing fromApplications in plant sciences · 2018
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Huei-Jiun SuInstitute of Ecology and Evolutionary Biology, National Taiwan University, Taipei, Taiwan.
Saskia A HogenhoutDepartment of Cell and Developmental Biology, John Innes Centre, Norwich, United Kingdom.
Abdullah M Al-SadiDepartment of Crop Sciences, Sultan Qaboos University, Al Khoud, Oman.
Chih-Horng KuoInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan; Molecular and Biological Agricultural Sciences Program, Taiwan International Graduate Program, National Chung Hsing University and Academia Sinica, Taipei, Taiwan; Biotechnology Center, National Chung Hsing University, Taichung, Taiwan.

Funding

Biotechnology and Biological Sciences Research Council BB/J004553/1Biotechnology and Biological Sciences Research Council BBS/E/J/000C0623
6 · The paper itself

Abstract

The genus Citrus contains many economically important fruits that are grown worldwide for their high nutritional and medicinal value. Due to frequent hybridizations among species and cultivars, the exact number of natural species and the taxonomic relationships within this genus are unclear. To compare the differences between the Citrus chloroplast genomes and to develop useful genetic markers, we used a reference-assisted approach to assemble the complete chloroplast genome of Omani lime (C. aurantiifolia). The complete C. aurantiifolia chloroplast genome is 159,893 bp in length; the organization and gene content are similar to most of the rosids lineages characterized to date. Through comparison with the sweet orange (C. sinensis) chloroplast genome, we identified three intergenic regions and 94 simple sequence repeats (SSRs) that are potentially informative markers with resolution for interspecific relationships. These markers can be utilized to better understand the origin of cultivated Citrus. A comparison among 72 species belonging to 10 families of representative rosids lineages also provides new insights into their chloroplast genome evolution.

Indexed as

Genome, ChloroplastBase SequenceCitrusComparative Genomic HybridizationLikelihood FunctionsMagnoliopsidaMicrosatellite RepeatsMolecular Sequence DataPhylogenyPlant ProteinsSequence Analysis, DNAPlant Proteins

Identifiers

PMID25398081
PMCPMC4232571

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.