Evidence map›Paper›PMID 25398046›Full record

ArticleViruses2014

Genetic characterization of goutanap virus, a novel virus related to negeviruses, cileviruses and higreviruses.

René Kallies, Anne Kopp, Florian Zirkel, Alejandro Estrada, Thomas R Gillespie, Christian Drosten, Sandra Junglen

Abstract read
In one paragraph

Article in Viruses, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

René KalliesInstitute of Virology, Medical Centre, University of Bonn, Sigmund-Freud-Str. 25, 53127 Bonn, Germany. rene.kallies@ufz.de.
Anne KoppInstitute of Virology, Medical Centre, University of Bonn, Sigmund-Freud-Str. 25, 53127 Bonn, Germany. kopp@virology-bonn.de.
Florian ZirkelInstitute of Virology, Medical Centre, University of Bonn, Sigmund-Freud-Str. 25, 53127 Bonn, Germany. zirkel@virology-bonn.de.
Alejandro EstradaEstación de Biología Tropical Los Tuxtlas, Instituto de Biología, Universidad Nacional Autónoma de México, Apdo 176, San Andres Tuxtla, Veracruz, Mexico. aestrada@primatesmx.com.
Thomas R GillespieDepartment of Environmental Sciences and Program in Population Biology, Ecology and Evolution, Emory University, Atlanta, GA 30322, USA. thomas.gillespie@emory.edu.
Christian DrostenInstitute of Virology, Medical Centre, University of Bonn, Sigmund-Freud-Str. 25, 53127 Bonn, Germany. drosten@virology-bonn.de.
Sandra JunglenInstitute of Virology, Medical Centre, University of Bonn, Sigmund-Freud-Str. 25, 53127 Bonn, Germany. junglen@virology-bonn.de.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pools of mosquitoes collected in Côte d'Ivoire and Mexico were tested for cytopathic effects on the mosquito cell line C6/36. Seven pools induced strong cytopathic effects after one to five days post infection and were further investigated by deep sequencing. The genomes of six virus isolates from Côte d'Ivoire showed pairwise nucleotide identities of ~99% among each other and of 56%-60% to Dezidougou virus and Wallerfield virus, two insect-specific viruses belonging to the proposed new taxon Negevirus. The novel virus was tentatively named Goutanap virus. The isolate derived from the Mexican mosquitoes showed 95% pairwise identity to Piura virus and was suggested to be a strain of Piura virus, named C6.7-MX-2008. Phylogenetic inferences based on a concatenated alignment of the methyltransferase, helicase, and RNA-dependent RNA polymerase domains showed that the new taxon Negevirus formed two monophyletic clades, named Nelorpivirus and Sandewavirus after the viruses grouping in these clades. Branch lengths separating these clades were equivalent to those of the related genera Cilevirus, Higrevirus and Blunervirus, as well as to those within the family Virgaviridae. Genetic distances and phylogenetic analyses suggest that Nelorpivirus and Sandewavirus might form taxonomic groups on genus level that may define alone or together with Cilevirus, Higrevirus and Blunervirus a viral family.

Indexed as

AnimalsCell LineCluster AnalysisCote d'IvoireCulicidaeCytopathogenic Effect, ViralHigh-Throughput Nucleotide SequencingMexicoMolecular Sequence DataPhylogenyRNA VirusesSequence Analysis, DNASequence Homology

Identifiers

PMID25398046
PMCPMC4246226

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.