Evidence map›Paper›PMID 25395643›Full record

ArticleGenome announcements2014

Draft Genome Sequence of Bacillus alcalophilus AV1934, a Classic Alkaliphile Isolated from Human Feces in 1934.

Oliver Attie, Anitha Jayaprakash, Hardik Shah, Ian T Paulsen, Masato Morino, Yuka Takahashi, Issay Narumi, Ravi Sachidanandam, Katsuya Satoh, Masahiro Ito and 1 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Genome announcements, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Oliver AttieDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Anitha JayaprakashDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Hardik ShahDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Ian T PaulsenDepartment of Chemistry and Biomolecular Sciences, Macquarie University, Sydney, NSW, Australia.
Masato MorinoDepartment of Pharmacology and Systems Therapeutics, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Yuka Takahashi
Issay NarumiGraduate School of Life Sciences, Toyo University, Itakura, Gunma, Japan.
Ravi SachidanandamDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, New York, USA.
Katsuya SatohIon Beam Mutagenesis Research Group, Medical and Biotechnological Application Unit, Quantum Beam Science Center, Japan Atomic Energy Agency, Takasaki, Gunma, Japan.
Masahiro Ito
Terry A KrulwichDepartment of Pharmacology and Systems Therapeutics, Icahn School of Medicine at Mount Sinai, New York, New York, USA terry.krulwich@mssm.edu.

Funding

PROTON COUPLING STRATEGIES IN ALKALIPHILIC BACILLUSR01GM028454 · NIGMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI KRULWICH, TERRY ANN · 1985 to 2017
$6.2M
NIGMS NIH HHS R01 GM028454
6 · The paper itself

Abstract

Bacillus alcalophilus AV1934, isolated from human feces, was described in 1934 before microbiome studies and recent indications of novel potassium ion coupling to motility in this extremophile. Here, we report draft sequences that will facilitate an examination of whether that coupling is part of a larger cycle of potassium ion-coupled transporters.

Identifiers

PMID25395643
PMCPMC4241669

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.