Evidence map›Paper›PMID 25393584›Full record

ArticleMolecular microbiology2015

SpoIIID-mediated regulation of σK function during Clostridium difficile sporulation.

Keyan Pishdadian, Kelly A Fimlaid, Aimee Shen

Abstract read
In one paragraph

Article in Molecular microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Unique growth and morphology properties of Clade 5bioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Clostridioides difficile Sporulation.Advances in experimental medicine and biology · 2024
    Review
  9. Article
  10. Article
  11. Emerging microbes & infections · 2022
    Review
  12. Role of the Spore Coat ProteinsMicroorganisms · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. An RNA-centric global view ofProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  17. Article
  18. Construction of a Conditionally AsporogenousFrontiers in microbiology · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Keyan PishdadianDepartment of Microbiology and Molecular Genetics, University of Vermont, Burlington, Vermont, 05405, USA.
Kelly A Fimlaid
Aimee Shen
University of Vermont · US

Funding

Vermont Immunobioloigy/ Infectious Diseases CenterP20GM103496 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI BUDD, RALPH C · 2012 to 2015
$8.7M
Center for Neuroscience ExcellenceP30GM103498 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI PARSONS, RODNEY L · 2012 to 2015
$4.3M
Regulation of Spore Germination in Clostridioides difficileR01GM108684 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI Aimee Shen · 2014 to 2026
$3.0M
Vermont Immunology/Infectious Diseases Training GrantT32AI055402 · NIAID · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI GARY E WARD · 2005 to 2026
$2.7M
Chemically Interrogating Clostridium difficile Glucosylating Toxin ActivationR00GM092934 · NIGMS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI SHEN, AIMEE · 2011 to 2013
$724k
NIAID NIH HHS T32 AI055402NIAID NIH HHS T32AI055402NIGMS NIH HHS P20 GM103496NIGMS NIH HHS P30 GM103498NIGMS NIH HHS R00 GM092934NIGMS NIH HHS R00GM092934NIGMS NIH HHS R01 GM108684NIGMS NIH HHS R01GM108684
6 · The paper itself

Abstract

The spore-forming bacterial pathogen Clostridium difficile is a leading cause of health-care-associated diarrhea worldwide. Although C. difficile spore formation is essential for disease transmission, the regulatory pathways that control this developmental process have only been partially characterized. In the well-studied spore-former Bacillus subtilis, the highly conserved σ(E) , SpoIIID and σ(K) regulatory proteins control gene expression in the mother cell to ensure proper spore formation. To define the precise requirement for SpoIIID and σ(K) during C. difficile sporulation, we analyzed spoIIID and sigK mutants using heterologous expression systems and RNA-Seq transcriptional profiling. These analyses revealed that expression of sigK from a SpoIIID-independent promoter largely bypasses the need for SpoIIID to produce heat-resistant spores. We also observed that σ(K) is active upon translation, suggesting that SpoIIID primarily functions to activate sigK. SpoIIID nevertheless plays auxiliary roles during sporulation, as it enhances levels of the exosporium morphogenetic protein CdeC in a σ(K) -dependent manner. Analyses of purified spores further revealed that SpoIIID and σ(K) control the adherence of the CotB coat protein to C. difficile spores, indicating that these proteins regulate multiple stages of spore formation. Collectively, these results highlight that diverse mechanisms control spore formation in the Firmicutes.

Indexed as

Bacterial ProteinsClostridioides difficileDNA-Binding ProteinsGene Expression Regulation, BacterialMicroarray AnalysisPromoter Regions, GeneticReal-Time Polymerase Chain ReactionSpores, BacterialTranscription FactorsBacterial ProteinsDNA-Binding Proteinssigma KTranscription Factors

Identifiers

PMID25393584
PMCPMC4377281
OpenAlexW1607746445

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.