Evidence map›Paper›PMID 25392913›Full record

ArticlePLoS computational biology2014

Global disease monitoring and forecasting with Wikipedia.

Nicholas Generous, Geoffrey Fairchild, Alina Deshpande, Sara Y Del Valle, Reid Priedhorsky

Abstract read
In one paragraph

Article in PLoS computational biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  18. Correlation between flu and Wikipedia's pages visualization.Acta bio-medica : Atenei Parmensis · 2021
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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Nicholas GenerousDefense Systems and Analysis Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America.
Geoffrey FairchildDefense Systems and Analysis Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America.
Alina DeshpandeDefense Systems and Analysis Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America.
Sara Y Del ValleDefense Systems and Analysis Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America.
Reid PriedhorskyDefense Systems and Analysis Division, Los Alamos National Laboratory, Los Alamos, New Mexico, United States of America.

Funding

Quantifying Model Uncertainty for Forecasting the Spread of Infectious DiseasesU01GM097658 · NIGMS · LOS ALAMOS NAT SECTY-LOS ALAMOS NAT LAB · PI DEL VALLE, SARA · 2011 to 2015
$3.3M
NIGMS NIH HHS U01 GM097658NIGMS NIH HHS U01-GM097658-01
6 · The paper itself

Abstract

Infectious disease is a leading threat to public health, economic stability, and other key social structures. Efforts to mitigate these impacts depend on accurate and timely monitoring to measure the risk and progress of disease. Traditional, biologically-focused monitoring techniques are accurate but costly and slow; in response, new techniques based on social internet data, such as social media and search queries, are emerging. These efforts are promising, but important challenges in the areas of scientific peer review, breadth of diseases and countries, and forecasting hamper their operational usefulness. We examine a freely available, open data source for this use: access logs from the online encyclopedia Wikipedia. Using linear models, language as a proxy for location, and a systematic yet simple article selection procedure, we tested 14 location-disease combinations and demonstrate that these data feasibly support an approach that overcomes these challenges. Specifically, our proof-of-concept yields models with r2 up to 0.92, forecasting value up to the 28 days tested, and several pairs of models similar enough to suggest that transferring models from one location to another without re-training is feasible. Based on these preliminary results, we close with a research agenda designed to overcome these challenges and produce a disease monitoring and forecasting system that is significantly more effective, robust, and globally comprehensive than the current state of the art.

Indexed as

Databases, FactualInternetCommunicable DiseasesDisease OutbreaksEnvironmental MonitoringForecastingGlobal HealthHumansModels, Theoretical

Identifiers

PMID25392913
PMCPMC4231164

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.