Evidence map›Paper›PMID 25392478›Full record

ArticleJournal of experimental botany2015

Complementation of the embryo-lethal T-DNA insertion mutant of AUXIN-BINDING-PROTEIN 1 (ABP1) with abp1 point mutated versions reveals crosstalk of ABP1 and phytochromes.

Yunus Effendi, Noel Ferro, Corinna Labusch, Markus Geisler, Günther F E Scherer

Open access · bronzeAbstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
4.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Auxin perception and downstream events.Current opinion in plant biology · 2016
    Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Auxin binding protein 1 (ABP1) is not required for either auxin signaling or Arabidopsis development.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Yunus EffendiLeibniz Universität Hannover, Institut für Gartenbauliche Produktionssysteme, Abt. Molekulare Ertragsphysiologie, Herrenhäuser Str. 2, D-30419 Hannover, Germany Al Azhar Indonesia University, Department of Biology, Sisingamangaraja, Jakarta 12110, Indonesia.
Noel FerroUniversity of Bonn, Mulliken Center for Theoretical Chemistry, Institute for Physical and Theoretical Chemistry, Beringstr. 4, D-53115 Bonn, Germany.
Corinna LabuschLeibniz Universität Hannover, Institut für Gartenbauliche Produktionssysteme, Abt. Molekulare Ertragsphysiologie, Herrenhäuser Str. 2, D-30419 Hannover, Germany.
Markus GeislerUniversity of Fribourg, Department of Biology - Plant Biology, Chemin de Museé 10, CH-1700 Fribourg, Switzerland.
Günther F E SchererLeibniz Universität Hannover, Institut für Gartenbauliche Produktionssysteme, Abt. Molekulare Ertragsphysiologie, Herrenhäuser Str. 2, D-30419 Hannover, Germany scherer@zier.uni-hannover.de.
Leibniz University Hannover · DEUniversity of Bonn · DEUniversity of Fribourg · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The function of the extracytoplasmic AUXIN-BINDING-PROTEIN1 (ABP1) is largely enigmatic. We complemented a homozygous T-DNA insertion null mutant of ABP1 in Arabidopsis thaliana Wassilewskia with three mutated and one wild-type (wt) ABP1 cDNA, all tagged C-terminally with a strepII-FLAG tag upstream the KDEL signal. Based on in silico modelling, the abp1 mutants were predicted to have altered geometries of the auxin binding pocket and calculated auxin binding energies lower than the wt. Phenotypes linked to auxin transport were compromised in these three complemented abp1 mutants. Red light effects, such as elongation of hypocotyls in constant red (R) and far-red (FR) light, in white light supplemented by FR light simulating shade, and inhibition of gravitropism by R or FR, were all compromised in the complemented lines. Using auxin- or light-induced expression of marker genes, we showed that auxin-induced expression was delayed already after 10 min, and light-induced expression within 60 min, even though TIR1/AFB or phyB are thought to act as receptors relevant for gene expression regulation. The expression of marker genes in seedlings responding to both auxin and shade showed that for both stimuli regulation of marker gene expression was altered after 10-20 min in the wild type and phyB mutant. The rapidity of expression responses provides a framework for the mechanics of functional interaction of ABP1 and phyB to trigger interwoven signalling pathways.

Indexed as

ArabidopsisBiological TransportDNA, BacterialIndoleacetic AcidsLightPhytochromePlant ProteinsPoint MutationReceptors, Cell SurfaceSignal Transductionauxin-binding protein 1DNA, BacterialIndoleacetic AcidsPhytochromePlant ProteinsReceptors, Cell SurfaceT-DNAabp1 mutantsArabidopsis thaliana.AUXIN-BINDING PROTEIN1 (ABP1)early auxin-regulated genesearly light-regulated genesgravitropismhypocotyl elongationphototropismphytochromeshade avoidance

Identifiers

PMID25392478
PMCPMC4265171
OpenAlexW2163039179

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.