Evidence map›Paper›PMID 25392426›Full record

ArticleNucleic acids research2015

Helminth.net: expansions to Nematode.net and an introduction to Trematode.net.

John Martin, Bruce A Rosa, Philip Ozersky, Kymberlie Hallsworth-Pepin, Xu Zhang, Veena Bhonagiri-Palsikar, Rahul Tyagi, Qi Wang, Young-Jun Choi, Xin Gao and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
8.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 66 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Trematode Genomics and Proteomics.Advances in experimental medicine and biology · 2024
    Article
  5. Review
  6. Article
  7. Xenobiotic metabolism and transport inJournal of toxicology and environmental health. Part B, Critical reviews · 2021
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. An Evaluation of theFrontiers in immunology · 2020
    Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. A Multi-Omics Database for Parasitic Nematodes and Trematodes.Methods in molecular biology (Clifton, N.J.) · 2018
    Article
  19. Article
  20. Perusal of parasitic nematode 'omics in the post-genomic era.Molecular and biochemical parasitology · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

John MartinThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.
Bruce A RosaThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.
Philip OzerskyThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.
Kymberlie Hallsworth-PepinThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.
Xu ZhangThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.
Veena Bhonagiri-PalsikarThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.
Rahul TyagiThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.
Qi WangThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.
Young-Jun ChoiThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.
Xin GaoThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.
Samantha N McNultyThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA.
Paul J BrindleyDepartment of Microbiology, Immunology & Tropical Medicine, and Research Center for Neglected Diseases of Poverty, School of Medicine & Health Sciences, The George Washington University, Washington, DC 20037, USA.
Makedonka MitrevaThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108, USA Department of Internal Medicine and Department of Genetics, Washington University School of Medicine, St. Louis, MO 63108, USA mmitreva@genome.wustl.edu.
Washington University in St. Louis · USGeorge Washington University · US

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
Targeting parasite-host communication to combat liver fluke-induced bile duct cancerR01CA164719 · NCI · GEORGE WASHINGTON UNIVERSITY · PI Paul J Brindley, THEWARACH LAHA · 2012 to 2026
$5.0M
COMPARATIVE GENOMICS OF PARASITIC NEMATODESR01AI081803 · NIAID · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2009 to 2018
$3.1M
Biomarkers of Opisthorchis viverrini-induced cholangiocarcinomaR01CA155297 · NCI · GEORGE WASHINGTON UNIVERSITY · PI BETHONY, JEFFREY MICHAEL, BRINDLEY, PAUL J · 2011 to 2015
$2.7M
EVOLUTION OF THE NEMATODE INTESTINE, A KEY HOST INTERFACER01GM097435 · NIGMS · WASHINGTON UNIVERSITY · PI MITREVA, MAKEDONKA · 2011 to 2019
$2.1M
Pathogenesis of Opisthorchiasis induced persistent periductal fibrosis and CCAP50AI098639 · NIAID · KHON KAEN UNIVERSITY · PI SRIPA, BANCHOB · 2012 to 2016
$1.6M
NCI NIH HHS CA155297NCI NIH HHS CA164719NCI NIH HHS R01 CA164719NHGRI NIH HHS U54HG003079NIAID NIH HHS AI081803NIAID NIH HHS AI098639NIGMS NIH HHS GM097435
6 · The paper itself

Abstract

Helminth.net (http://www.helminth.net) is the new moniker for a collection of databases: Nematode.net and Trematode.net. Within this collection we provide services and resources for parasitic roundworms (nematodes) and flatworms (trematodes), collectively known as helminths. For over a decade we have provided resources for studying nematodes via our veteran site Nematode.net (http://nematode.net). In this article, (i) we provide an update on the expansions of Nematode.net that hosts omics data from 84 species and provides advanced search tools to the broad scientific community so that data can be mined in a useful and user-friendly manner and (ii) we introduce Trematode.net, a site dedicated to the dissemination of data from flukes, flatworm parasites of the class Trematoda, phylum Platyhelminthes. Trematode.net is an independent component of Helminth.net and currently hosts data from 16 species, with information ranging from genomic, functional genomic data, enzymatic pathway utilization to microbiome changes associated with helminth infections. The databases' interface, with a sophisticated query engine as a backbone, is intended to allow users to search for multi-factorial combinations of species' omics properties. This report describes updates to Nematode.net since its last description in NAR, 2012, and also introduces and presents its new sibling site, Trematode.net.

Indexed as

Databases, GeneticGenome, HelminthAnimalsGenomicsHumansInternetMicrobiotaNematodaTrematodaTrematode Infections

Identifiers

PMID25392426
PMCPMC4383941
OpenAlexW2068796307

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.