ArticleNucleic acids research2015
The coffee genome hub: a resource for coffee genomes.
Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.
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Who cites it
30 citing papers in PubMed.
- Arabica coffee SBP transcription factor family members respond to brown leaf spot stress by regulating their expression.BMC plant biology · 2026Article
- Lipid Metabolism and Actin Cytoskeleton Regulation Underlie Yield and Disease Resistance in TwoPlants (Basel, Switzerland) · 2025Article
- Genome-wide characterization of invertases in Arabica coffee and its progenitors reveals putative genes involved in fruit development.Functional & integrative genomics · 2025Article
- Genomic-assisted breeding for climate-smart coffee.The plant genome · 2024Article
- Metabolic Pathway Reconstruction Indicates the Presence of Important Medicinal Compounds inInternational journal of molecular sciences · 2023Article
- Genome assemblies and comparison of two Neotropical spiral gingers: Costus pulverulentus and C. lasius.The Journal of heredity · 2023Article
- Global Patterns of Subgenome Evolution in Organelle-Targeted Genes of Six Allotetraploid Angiosperms.Molecular biology and evolution · 2022Article
- Genome-Wide Analysis, Modeling, and Identification of Amino Acid Binding Motifs Suggest the Involvement ofPlants (Basel, Switzerland) · 2021Article
- An ancient whole-genome duplication event and its contribution to flavor compounds in the tea plant (Camellia sinensis).Horticulture research · 2021Article
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- Genome-Wide Screening and Characterization of Non-Coding RNAs inNon-coding RNA · 2020Article
- Development and evaluation of a genome-wide Coffee 8.5K SNP array and its application for high-density genetic mapping and for investigating the origin of Coffea arabica L.Plant biotechnology journal · 2019Article
- Homeologous regulation of Frigida-like genes provides insights on reproductive development and somatic embryogenesis in the allotetraploid Coffea arabica.Scientific reports · 2019Article
- Rice Galaxy: an open resource for plant science.GigaScience · 2019Article
- Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops.Nucleic acids research · 2019Article
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- Article
- Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L.Scientific reports · 2018Article
- Glycosyltransferase Family 61 in Liliopsida (Monocot): The Story of a Gene Family Expansion.Frontiers in plant science · 2018Article
- Long-read sequencing of the coffee bean transcriptome reveals the diversity of full-length transcripts.GigaScience · 2017Article
Corrections and comments
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Authors and funding
10 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The whole genome sequence of Coffea canephora, the perennial diploid species known as Robusta, has been recently released. In the context of the C. canephora genome sequencing project and to support post-genomics efforts, we developed the Coffee Genome Hub (http://coffee-genome.org/), an integrative genome information system that allows centralized access to genomics and genetics data and analysis tools to facilitate translational and applied research in coffee. We provide the complete genome sequence of C. canephora along with gene structure, gene product information, metabolism, gene families, transcriptomics, syntenic blocks, genetic markers and genetic maps. The hub relies on generic software (e.g. GMOD tools) for easy querying, visualizing and downloading research data. It includes a Genome Browser enhanced by a Community Annotation System, enabling the improvement of automatic gene annotation through an annotation editor. In addition, the hub aims at developing interoperability among other existing South Green tools managing coffee data (phylogenomics resources, SNPs) and/or supporting data analyses with the Galaxy workflow manager.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.