Evidence map›Paper›PMID 25391773›Full record

ArticleMolecular biology reports2015

Polymorphisms in nucleotide excision repair genes and susceptibility to colorectal cancer in the Polish population.

Katarzyna Paszkowska-Szczur, Rodney J Scott, Bohdan Górski, Cezary Cybulski, Grzegorz Kurzawski, Dagmara Dymerska, Satish Gupta, Thierry van de Wetering, Bartłomiej Masojć, Aniruddh Kashyap and 5 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular biology reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 4 pooled it
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 4 syntheses or guidelines pooled it, 33 citations in OpenAlex.

  1. Pooled it
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  9. American journal of translational research · 2019
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  19. Journal of Cancer · 2016
    Article
  20. Lack of Associations betweenBioMed research international · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 2 countries.

Katarzyna Paszkowska-SzczurDepartment of Genetics and Pathomorphology, International Hereditary Cancer Center, Pomeranian Medical University, Polabska 4, Szczecin, Poland, katarzynapredygier@yahoo.pl.
Rodney J Scott
Bohdan Górski
Cezary Cybulski
Grzegorz Kurzawski
Dagmara Dymerska
Satish Gupta
Thierry van de Wetering
Bartłomiej Masojć
Aniruddh Kashyap
Paulina Gapska
Tomasz Gromowski
Józef Kładny
Jan Lubiński
Tadeusz Dębniak
Pomeranian Medical University · PLInternational Hereditary Cancer Center · PLHunter Medical Research Institute · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Xeroderma pigmentosum (XP) is a rare autosomal recessive disease that is associated with a severe deficiency in nucleotide excision repair. Genetic polymorphisms in XP genes may be associated with a change in DNA repair capacity, which could be associated with colorectal cancer development. We assessed the association between 94 single nucleotide polymorphisms (SNPs) within seven XP genes (XPA-XPG) and the colorectal cancer risk in the Polish population. We genotyped 758 unselected patients with colorectal cancer and 1,841 healthy adults. We found that a significantly decreased risk of colorectal cancer was associated with XPC polymorphism rs2228000_CT genotype (OR 0.59; p < 0.0001) and the rs2228000_TT genotype (OR 0.29; p < 0.0001) compared to the reference genotype (CC). And an increased disease risk was associated with the XPD SNP, rs1799793_AG genotype (OR 1.44, p = 0.018) and rs1799793_AA genotype (OR 3.31, p < 0.0001) compared to the reference genotype. Haplotype analysis within XPC, XPD and XPG revealed haplotypes associated with an altered colorectal cancer risk. Stratified analysis by gender showed differences between the association of three SNPs: XPC rs2228000, XPD rs1799793 and XPD rs238406 in females and males. Association analysis between age of disease onset and polymorphisms in XPD (rs1799793) and XPC (rs2228000) revealed differences in the prevalence of these variants in patients under and over 50 years of age. Our results confirmed that polymorphisms in XPC and XPD may be associated with the risk of colorectal cancer.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAdultAgedAged, 80 and overAllelesCase-Control StudiesColorectal NeoplasmsDNA-Binding ProteinsDNA Excision Repair Protein ERCC-5DNA RepairEndonucleasesFemaleGenotypeHaplotypesHumansDNA-Binding ProteinsDNA Excision Repair Protein ERCC-5EndonucleasesNuclear ProteinsTranscription FactorsXeroderma Pigmentosum Group D ProteinXPC protein, human

Identifiers

PMID25391773
PMCPMC4330403
OpenAlexW2086539079

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.