Evidence map›Paper›PMID 25390932›Full record

ArticleMedical science monitor basic research2014

Matrix-assisted laser desorption ionization: time of flight mass spectrometry-identified models for detection of ESBL-producing bacterial strains.

Bo Li, Tongsheng Guo, Fen Qu, Boan Li, Haibin Wang, Zhiqiang Sun, Xiaohan Li, Zhiqiang Gao, Chunmei Bao, Chenglong Zhang and 2 more

Abstract read
In one paragraph

Article in Medical science monitor basic research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Bo LiGraduate Student Team, Chinese PLA Postgraduate Medical School, Beijing, China (mainland).
Tongsheng GuoCenter for Clinical Laboratory, 302 Hospital of PLA, Beijing, China (mainland).
Fen QuCenter for Clinical Laboratory, 302 Hospital of PLA, Beijing, China (mainland).
Boan LiCenter for Clinical Laboratory, 302 Hospital of PLA, Beijing, China (mainland).
Haibin WangCenter for Clinical Laboratory, 302 Hospital of PLA, Beijing, China (mainland).
Zhiqiang SunCenter for Clinical Laboratory, 302 Hospital of PLA, Beijing, China (mainland).
Xiaohan LiCenter for Clinical Laboratory, 302 Hospital of PLA, Beijing, China (mainland).
Zhiqiang GaoCenter for Clinical Laboratory, 302 Hospital of PLA, Beijing, China (mainland).
Chunmei BaoCenter for Clinical Laboratory, 302 Hospital of PLA, Beijing, China (mainland).
Chenglong ZhangCenter for Clinical Laboratory, 302 Hospital of PLA, Beijing, China (mainland).
Xiaoxi LiCenter for Clinical Laboratory, 302 Hospital of PLA, Beijing, China (mainland).
Yuanli MaoCenter for Clinical Laboratory, 302 Hospital of PLA, Beijing, China (mainland).

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe increase in the amount of extended spectrum beta-lactamases (ESBL)-producing gram-negative bacteria is seriously threatening human health in recent years. Therefore, it is necessary to develop a rapid and reliable method for identification of ESBLs. The purpose of this study was to establish a novel method to discriminate between ESBL-producing and non- ESBL-producing bacteria by using the matrix-assisted laser desorption/ionization time of flight mass spectrometry (MALDI-TOF-MS) technique. MATERIAL/

methodsWe detected hydrolyzed production of cefotaxime after incubation with 69 gram-negative bacteria by using MALDI-TOF-MS. Then we established genetic algorithm (GA), supervised neural networks (SNN), and quick classifier (QC) models using several peaks to identify ESBL-producing strains. To confirm the clinical applicability of the models established, a blinded validation test was performed in 34 clinical isolated strains.

resultsUsing ClinPro Tools software, we identified 4 peaks (456 Da, 396 Da, 370 Da, and 371 Da) in mass spectra of cefotaxime solution that have high enough specificity to discriminate ESBL-producing from non- ESBL-producing strains. Recognition capability of models established were 97.5% (GA), 92.5% (SNN), and 92.5% (QC), and cross validation rates were 90.15% (GA), 97.62 (SNN), and 97.62% (QC). The accuracy rates of the blinded validation test were 82.4% (GA), 88.2% (SNN), and 82.4% (QC).

conclusionsOur results demonstrate that identification of ESBLs strains by MALDI-TOF-MS has potential clinical value and could be widely used in the future as a routine test in clinical microbiology laboratories.

Indexed as

Models, BiologicalAlgorithmsBacteriabeta-LactamasesCefotaximeElectrophoresis, Gel, Two-DimensionalHumansMolecular WeightReproducibility of ResultsROC CurveSpectrometry, Mass, Matrix-Assisted Laser Desorption-Ionizationbeta-LactamasesCefotaxime

Identifiers

PMID25390932
PMCPMC4242706

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.