Evidence map›Paper›PMID 25390077›Full record

ArticleThe Journal of urology2015

Phenotype specific association of the TGFBR3 locus with nonsyndromic cryptorchidism.

Julia S Barthold, Yanping Wang, Thomas F Kolon, Claude Kollin, Agneta Nordenskjöld, Alicia Olivant Fisher, T Ernesto Figueroa, Ahmad H BaniHani, Jennifer A Hagerty, Ricardo Gonzalez and 11 more

Open access · greenAbstract read
In one paragraph

Article in The Journal of urology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 3 countries.

Julia S BartholdNemours Biomedical Research, Alfred I. duPont Hospital for Children, Wilmington, Delaware; Division of Urology, Alfred I. duPont Hospital for Children, Wilmington, Delaware. Electronic address: jbarthol@nemours.org.
Yanping WangNemours Biomedical Research, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Thomas F KolonDivision of Urology, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Claude KollinDepartment of Women's and Children's Health, Karolinska Institutet, Stockholm, Sweden.
Agneta NordenskjöldDepartment of Women's and Children's Health, Karolinska Institutet, Stockholm, Sweden.
Alicia Olivant FisherNemours Biomedical Research, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
T Ernesto FigueroaDivision of Urology, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Ahmad H BaniHaniDivision of Urology, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Jennifer A HagertyDivision of Urology, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Ricardo GonzalezDivision of Urology, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Paul H NohDivision of Urology, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Rosetta M ChiavacciCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Kisha R HardenCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Debra J AbramsCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Cecilia E KimCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Abigail B MatesonNemours Biomedical Research, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Alan K RobbinsNemours Biomedical Research, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Jin LiCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania.
Robert E AkinsNemours Biomedical Research, Alfred I. duPont Hospital for Children, Wilmington, Delaware.
Hakon HakonarsonCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania; Division of Genetics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania; Department of Pediatrics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania.
Marcella DevotoDivision of Genetics, Children's Hospital of Philadelphia, Philadelphia, Pennsylvania; Department of Pediatrics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania; Department of Biostatistics and Epidemiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania; Department of Molecular Medicine, Sapienza University, Rome, Italy.
Alfred I. duPont Hospital for Children · USChildren's Hospital of Philadelphia · USKarolinska Institutet · SESapienza University of Rome · IT

Funding

TRAJECTORIES OF CHANGE IN BMI STATUS IN EARLY CHILDHOODP20RR020173 · NCRR · NEMOURS CHILDREN'S HOSPITAL, DELAWARE · PI MASON, ROBERT · 2004 to 2011
$14.9M
Genetic Basis of CryptorchidismR01HD060769 · NICHD · NEMOURS CHILDREN'S HOSPITAL, DELAWARE · PI BARTHOLD, JULIA SPENCER · 2010 to 2014
$2.0M
NCRR NIH HHS P20 RR020173NICHD NIH HHS R01 HD060769
6 · The paper itself

Abstract

purposeBased on a genome-wide association study of testicular dysgenesis syndrome showing a possible association with TGFBR3, we analyzed data from a larger, phenotypically restricted cryptorchidism population for potential replication of this signal. MATERIALS AND

methodsWe excluded samples based on strict quality control criteria, leaving 844 cases and 2,718 controls of European ancestry that were analyzed in 2 separate groups based on genotyping platform (ie Illumina® HumanHap550, version 1 or 3, or Human610-Quad, version 1 BeadChip in group 1 and Human OmniExpress 12, version 1 BeadChip platform in group 2). Analyses included genotype imputation at the TGFBR3 locus, association analysis of imputed data with correction for population substructure, subsequent meta-analysis of data for groups 1 and 2, and selective genotyping of independent cases (330) and controls (324) for replication. We also measured Tgfbr3 mRNA levels and performed TGFBR3/betaglycan immunostaining in rat fetal gubernaculum.

resultsWe identified suggestive (p ≤ 1× 10(-4)) association of markers in/near TGFBR3, including rs9661103 (OR 1.40; 95% CI 1.20, 1.64; p = 2.71 × 10(-5)) and rs10782968 (OR 1.58; 95% CI 1.26, 1.98; p = 9.36 × 10(-5)) in groups 1 and 2, respectively. In subgroup analyses we observed strongest association of rs17576372 (OR 1.42; 95% CI 1.24, 1.60; p = 1.67 × 10(-4)) with proximal and rs11165059 (OR 1.32; 95% CI 1.15, 1.38; p = 9.42 × 10(-4)) with distal testis position, signals in strong linkage disequilibrium with rs9661103 and rs10782968, respectively. Association of the prior genome-wide association study signal (rs12082710) was marginal (OR 1.13; 95% CI 0.99, 1.28; p = 0.09 for group 1), and we were unable to replicate signals in our independent cohort. Tgfbr3/betaglycan was differentially expressed in wild-type and cryptorchid rat fetal gubernaculum.

conclusionsThese data suggest complex or phenotype specific association of cryptorchidism with TGFBR3 and the gubernaculum as a potential target of TGFβ signaling.

Indexed as

ChildChild, PreschoolCryptorchidismHumansInfantMalePhenotypeProteoglycansReceptors, Transforming Growth Factor betabetaglycanProteoglycansReceptors, Transforming Growth Factor betacryptorchidismgenetic association studiesphenotypetestis

Identifiers

PMID25390077
PMCPMC4406821
OpenAlexW2158584133

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.