Evidence map›Paper›PMID 25388789›Full record

ArticleJournal of translational medicine2014

Targeted genomic capture and massively parallel sequencing to identify novel variants causing Chinese hereditary hearing loss.

Qinjun Wei, Hongmei Zhu, Xuli Qian, Zhibin Chen, Jun Yao, Yajie Lu, Xin Cao, Guangqian Xing

Abstract read
In one paragraph

Article in Journal of translational medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. De NovoInternational journal of molecular sciences · 2022
    Article
  12. A Novel MissenseBioMed research international · 2022
    Article
  13. Article
  14. A MissenseBioMed research international · 2021
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Four Novel Variants inNeural plasticity · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Qinjun WeiDepartment of Biotechnology, School of Basic Medical Science, Nanjing Medical University, Nanjing, 210029, PR China. wqj@njmu.edu.cn.
Hongmei ZhuDepartment of Otolaryngology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, 210029, PR China. 8215013@qq.com.
Xuli QianDepartment of Biotechnology, School of Basic Medical Science, Nanjing Medical University, Nanjing, 210029, PR China. goodmale2000@163.com.
Zhibin ChenDepartment of Otolaryngology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, 210029, PR China. czbwy71@163.com.
Jun YaoDepartment of Biotechnology, School of Basic Medical Science, Nanjing Medical University, Nanjing, 210029, PR China. joelyao@163.com.
Yajie LuDepartment of Biotechnology, School of Basic Medical Science, Nanjing Medical University, Nanjing, 210029, PR China. 13851543104@163.com.
Xin CaoDepartment of Biotechnology, School of Basic Medical Science, Nanjing Medical University, Nanjing, 210029, PR China. caoxin@njmu.edu.cn.
Guangqian XingDepartment of Otolaryngology, The First Affiliated Hospital of Nanjing Medical University, Nanjing, 210029, PR China. xing-gq@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHereditary hearing loss is genetically heterogeneous, and hundreds of mutations in than 60 genes are involved in this disease. Therefore, it is difficult to identify the causative gene mutations involved. In this study, we combined targeted genomic capture and massively parallel sequencing (MPS) to address this issue.

methodsUsing targeted genomic capture and MPS, 104 genes and three microRNA regions were selected and simultaneously sequenced in 23 unrelated probands of Chinese families with nonsyndromic hearing loss. The results were validated by Sanger sequencing for all available members of the probands' families. To analyze the possible pathogenic functional effects of the variants, three types of prediction programs (Mutation Taster, PROVEAN and SIFT) were used. A total of 195 healthy Chinese Han individuals were compared as controls to verify the novel causative mutations.

resultsOf the 23 probands, six had mutations in DFNA genes [WFS1 (n = 2), COCH, ACTG1, TMC1, and POU4F3] known to cause autosomal dominant nonsyndromic hearing loss. These included one novel in-frame indel mutation, three novel missense mutations and two reported missense mutations. Furthermore, one proband from a family with recessive DFNB carried two monoallelic mutations in the GJB2 and USH2A genes. All of these mutations co-segregated with the hearing loss phenotype in 36 affected individuals from 7 families and were predicted to be pathogenic.

conclusionsMutations in uncommon deafness genes contribute to a portion of nonsyndromic deafness cases. In the future, critical gene mutations may be accurately and quickly identified in families with hereditary hearing loss by targeted genomic capture and MPS.

Indexed as

Genome, HumanConnexin 26ConnexinsEthnicityFemaleHearing LossHumansMaleMutationPedigreeSequence AnalysisConnexin 26ConnexinsGJB2 protein, human

Identifiers

PMID25388789
PMCPMC4234825

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.