Evidence map›Paper›PMID 25388376›Full record

ArticleNature communications2014

Unencapsulated Streptococcus pneumoniae from conjunctivitis encode variant traits and belong to a distinct phylogenetic cluster.

Michael D Valentino, Abigail Manson McGuire, Jason W Rosch, Paulo J M Bispo, Corinna Burnham, Christine M Sanfilippo, Robert A Carter, Michael E Zegans, Bernard Beall, Ashlee M Earl and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Biological puzzles solved by usingJournal of bacteriology · 2024
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  6. DistinctbioRxiv : the preprint server for biology · 2024
    Article
  7. Article
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  10. Article
  11. Article
  12. Targeted Killing of OcularOphthalmology science · 2022
    Article
  13. Absence ofMicroorganisms · 2022
    Article
  14. Population structure of ocularMicrobial genomics · 2022
    Article
  15. Review
  16. Review
  17. Review
  18. Intra-Species Interactions inFrontiers in cellular and infection microbiology · 2021
    Article
  19. Article
  20. Multistate population and whole genome sequence-based strain surveillance of invasive pneumococci recovered in the USA during 2017.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 1 country.

Michael D Valentino1] Department of Ophthalmology, Massachusetts Eye and Ear Infirmary, 243 Charles Street C703, Boston, Massachusetts 02114, USA [2] Department of Microbiology and Immunobiology, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA [3] The Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, Massachusetts 02141, USA.
Abigail Manson McGuireThe Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, Massachusetts 02141, USA.
Jason W RoschDepartment of Infectious Diseases, St. Jude Children's Research Hospital, 262 Danny Thomas Pl., Memphis, Tennessee 38105, USA.
Paulo J M Bispo1] Department of Ophthalmology, Massachusetts Eye and Ear Infirmary, 243 Charles Street C703, Boston, Massachusetts 02114, USA [2] Department of Microbiology and Immunobiology, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.
Corinna BurnhamDepartment of Infectious Diseases, St. Jude Children's Research Hospital, 262 Danny Thomas Pl., Memphis, Tennessee 38105, USA.
Christine M SanfilippoBausch and Lomb Inc., 1400 Goodman Street North, Rochester, New York 14609, USA.
Robert A CarterDepartment of Infectious Diseases, St. Jude Children's Research Hospital, 262 Danny Thomas Pl., Memphis, Tennessee 38105, USA.
Michael E ZegansDepartment of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, 1 Rope Ferry Road, Hanover, New Hampshire 03755, USA.
Bernard BeallStreptococcus Laboratory, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, Georgia 30333, USA.
Ashlee M EarlThe Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, Massachusetts 02141, USA.
Elaine I TuomanenDepartment of Infectious Diseases, St. Jude Children's Research Hospital, 262 Danny Thomas Pl., Memphis, Tennessee 38105, USA.
Timothy W MorrisBausch and Lomb Inc., 1400 Goodman Street North, Rochester, New York 14609, USA.
Wolfgang Haas1] Department of Ophthalmology, Massachusetts Eye and Ear Infirmary, 243 Charles Street C703, Boston, Massachusetts 02114, USA [2] Department of Microbiology and Immunobiology, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA.
Michael S Gilmore1] Department of Ophthalmology, Massachusetts Eye and Ear Infirmary, 243 Charles Street C703, Boston, Massachusetts 02114, USA [2] Department of Microbiology and Immunobiology, Harvard Medical School, 77 Avenue Louis Pasteur, Boston, Massachusetts 02115, USA [3] The Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, Massachusetts 02141, USA.
St. Jude Children's Research Hospital · USBroad Institute · USHarvard University · USMassachusetts Eye and Ear Infirmary · USCenters for Disease Control and Prevention · USDartmouth College · USUniversity of Rochester · US

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI EARL, ASHLEE MIRIAM · 2014 to 2024
$66.5M
Technical Mother Machine CoreP01AI083214 · NIAID · SCHEPENS EYE RESEARCH INSTITUTE · PI Michael S Gilmore · 2009 to 2026
$39.4M
Training Program in the Molecular Bases of Eye DiseasesT32EY007145 · NEI · SCHEPENS EYE RESEARCH INSTITUTE · PI Patricia Ann D'Amore, MEREDITH GREGORY-KSANDER · 1997 to 2026
$4.5M
Molecular Basis for Ocular Surface Tropism in ConjunctivitisR01EY024285 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI GILMORE, MICHAEL S · 2014 to 2017
$1.6M
NEI NIH HHS EY007145NEI NIH HHS R01 EY024285NEI NIH HHS T32 EY007145NIAID NIH HHS AI083214NIAID NIH HHS HHSN272200900018CNIAID NIH HHS P01 AI083214NIAID NIH HHS U19 AI110818
6 · The paper itself

Abstract

Streptococcus pneumoniae, an inhabitant of the upper respiratory mucosa, causes respiratory and invasive infections as well as conjunctivitis. Strains that lack the capsule, a main virulence factor and the target of current vaccines, are often isolated from conjunctivitis cases. Here we perform a comparative genomic analysis of 271 strains of conjunctivitis-causing S. pneumoniae from 72 postal codes in the United States. We find that the vast majority of conjunctivitis strains are members of a distinct cluster of closely related unencapsulated strains. These strains possess divergent forms of pneumococcal virulence factors (such as CbpA and neuraminidases) that are not shared with other unencapsulated nasopharyngeal S. pneumoniae. They also possess putative adhesins that have not been described in encapsulated pneumococci. These findings suggest that the unencapsulated strains capable of causing conjunctivitis utilize a pathogenesis strategy substantially different from that described for S. pneumoniae at other infection sites.

Indexed as

Adhesins, BacterialAsymptomatic InfectionsBacterial CapsulesBlotting, WesternConjunctivitis, BacterialGenome, BacterialHumansMultigene FamilyMultilocus Sequence TypingPhylogenyPhylogeographyPneumococcal InfectionsStreptococcus pneumoniaeUnited StatesVirulence FactorsAdhesins, BacterialVirulence Factors

Identifiers

PMID25388376
PMCPMC4231546
OpenAlexW2111619978

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.