Evidence map›Paper›PMID 25388089›Full record

ArticleClinical and translational science2015

Global gene expression profiling in R155H knock-in murine model of VCP disease.

Angèle Nalbandian, Svetlana Ghimbovschi, Zuyi Wang, Susan Knoblach, Katrina J Llewellyn, Jouni Vesa, Eric P Hoffman, Virginia E Kimonis

Open access · bronzeAbstract read
In one paragraph

Article in Clinical and translational science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact, top 88% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Therapeutic targeting of ALS pathways: Refocusing an incomplete picture.Annals of clinical and translational neurology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Angèle NalbandianDepartment of Pediatrics, Division of Genetics and Metabolism, University of California-Irvine, Irvine, California, USA.
Svetlana Ghimbovschi
Zuyi Wang
Susan Knoblach
Katrina J Llewellyn
Jouni Vesa
Eric P Hoffman
Virginia E Kimonis
Children's National · USUniversity of California, Irvine · US

Funding

Genetic basis of myopathy with Paget disease of boneR01AR050236 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI KIMONIS, VIRGINIA EUNICE · 2004 to 2008
$1.3M
Translational Studies in VCP Inclusion Body Myopathy with Paget Disease of BoneR56AR050236 · NIAMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI KIMONIS, VIRGINIA EUNICE · 2009 to 2009
$437k
NIAMS NIH HHS AR050236NIAMS NIH HHS R01 AR050236NIAMS NIH HHS R56 AR050236
6 · The paper itself

Abstract

Dominant mutations in the valosin-containing protein (VCP) gene cause inclusion body myopathy associated with Paget disease of bone and frontotemporal dementia, which is characterized by progressive muscle weakness, dysfunction in bone remodeling, and frontotemporal dementia. More recently, VCP has been linked to 2% of familial amyotrophic lateral sclerosis cases. VCP plays a significant role in a plethora of cellular functions including membrane fusion, transcription activation, nuclear envelope reconstruction, postmitotic organelle reassembly, and cell cycle control. To elucidate the pathological mechanisms underlying the VCP disease progression, we have previously generated a VCP(R155H/+) mouse model with the R155H mutation. Histological analyses of mutant muscle showed vacuolization of myofibrils, centrally located nuclei, and disorganized muscle fibers. Global expression profiling of VCP(R155H/+) mice using gene annotations by DAVID identified key dysregulated signaling pathways including genes involved in the physiological system development and function, diseases and disorders, and molecular and cellular functions. There were a total of 212 significantly dysregulated genes, several of which are involved in the regulation of proteasomal function and NF-κB signaling cascade. Findings of the gene expression study were validated by using quantitative reverse transcriptase polymerase chain reaction analyses to test genes involved in various signaling cascades. This investigation reveals the importance of the VCP(R155H/+) mouse model in the understanding of cellular and molecular mechanisms causing VCP-associated neurodegenerative diseases and in the discovery of novel therapeutic advancements and strategies for patients suffering with these debilitating disorders.

Indexed as

Amino Acid SubstitutionGene Expression ProfilingGene Knock-In TechniquesAdenosine TriphosphatasesAnimalsCell Cycle ProteinsDisease Models, AnimalGene Expression RegulationGene Regulatory NetworksHumansMiceMusclesNerve DegenerationOligonucleotide Array Sequence AnalysisReal-Time Polymerase Chain ReactionReproducibility of ResultsAdenosine TriphosphatasesCell Cycle ProteinsValosin Containing ProteinVCP protein, humanVcp protein, mouse

Identifiers

PMID25388089
PMCPMC4329058
OpenAlexW2153160559

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.