Evidence map›Paper›PMID 25385643›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

XerD-mediated FtsK-independent integration of TLCϕ into the Vibrio cholerae genome.

Caroline Midonet, Bhabatosh Das, Evelyne Paly, Francois-Xavier Barre

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Identification of novel tetracycline resistance geneEmerging microbes & infections · 2020
    Article
  8. Article
  9. Insights into TLCΦ lysogeny: A twist in the mechanism of IMEX integration.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. The TLCΦ satellite phage harbors a Xer recombination activation factor.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  11. Article
  12. Article
  13. Review
  14. How Xer-exploiting mobile elements overcome cellular control.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  15. FtsK translocation permits discrimination between an endogenous and an imported Xer/dif recombination complex.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Caroline MidonetInstitute for Integrative Biology of the Cell (I2BC), Université Paris Saclay, Commissariat à l'Énergie Atomique, CNRS, Université Paris Sud, 91198 Gif sur Yvette, France.
Bhabatosh DasInstitute for Integrative Biology of the Cell (I2BC), Université Paris Saclay, Commissariat à l'Énergie Atomique, CNRS, Université Paris Sud, 91198 Gif sur Yvette, France.
Evelyne PalyInstitute for Integrative Biology of the Cell (I2BC), Université Paris Saclay, Commissariat à l'Énergie Atomique, CNRS, Université Paris Sud, 91198 Gif sur Yvette, France.
Francois-Xavier BarreInstitute for Integrative Biology of the Cell (I2BC), Université Paris Saclay, Commissariat à l'Énergie Atomique, CNRS, Université Paris Sud, 91198 Gif sur Yvette, France barre@cgm.cnrs-gif.fr.
Université Paris-Saclay · FRCommissariat à l'Énergie Atomique et aux Énergies Alternatives · FRUniversité Paris-Sud · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As in most bacteria, topological problems arising from the circularity of the two Vibrio cholerae chromosomes, chrI and chrII, are resolved by the addition of a crossover at a specific site of each chromosome, dif, by two tyrosine recombinases, XerC and XerD. The reaction is under the control of a cell division protein, FtsK, which activates the formation of a Holliday Junction (HJ) intermediate by XerD catalysis that is resolved into product by XerC catalysis. Many plasmids and phages exploit Xer recombination for dimer resolution and for integration, respectively. In all cases so far described, they rely on an alternative recombination pathway in which XerC catalyzes the formation of a HJ independently of FtsK. This is notably the case for CTXϕ, the cholera toxin phage. Here, we show that in contrast, integration of TLCϕ, a toxin-linked cryptic satellite phage that is almost always found integrated at the chrI dif site before CTXϕ, depends on the formation of a HJ by XerD catalysis, which is then resolved by XerC catalysis. The reaction nevertheless escapes the normal cellular control exerted by FtsK on XerD. In addition, we show that the same reaction promotes the excision of TLCϕ, along with any CTXϕ copy present between dif and its left attachment site, providing a plausible mechanism for how chrI CTXϕ copies can be eliminated, as occurred in the second wave of the current cholera pandemic.

Indexed as

Genome, BacterialVirus IntegrationBacterial ProteinsBacteriophagesBiocatalysisElectrophoretic Mobility Shift AssayVibrio choleraeBacterial Proteinscholerachromosome segregationlateral gene transferlysogenic conversionsite-specific DNA recombination

Identifiers

PMID25385643
PMCPMC4250166
OpenAlexW2096804554

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.