Evidence map›Paper›PMID 25385592›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication.

Michael J Montague, Gang Li, Barbara Gandolfi, Razib Khan, Bronwen L Aken, Steven M J Searle, Patrick Minx, LaDeana W Hillier, Daniel C Koboldt, Brian W Davis and 15 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 183 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
183citing papers in PubMed, 1 pooled it
16.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

183 citing papers in PubMed, 1 synthesis or guideline pooled it, 353 citations in OpenAlex.

  1. Guideline
  2. Gaps and Controversies in Feline Food Palatability.Animals : an open access journal from MDPI · 2026
    Review
  3. Review
  4. Novel mechanisms of chemosensory adaptation to the cave environment.bioRxiv : the preprint server for biology · 2026
    Article
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  8. Article
  9. Article
  10. Review
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  12. Article
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  15. Article
  16. Article
  17. Article
  18. Genetic Testing: practical dos and don'ts for cats.Journal of feline medicine and surgery · 2024
    Review
  19. Article
  20. Article

123 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 11 institutions in 5 countries.

Michael J MontagueThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108;ORCID http://orcid.org/0000-0003-0253-4404
Gang LiDepartment of Veterinary Integrative Biosciences, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843;
Barbara GandolfiDepartment of Veterinary Medicine & Surgery, College of Veterinary Medicine, University of Missouri, Columbia, MO 65201;
Razib KhanPopulation Health & Reproduction, School of Veterinary Medicine, University of California, Davis, CA 95616;
Bronwen L AkenWellcome Trust Sanger Institute, Hinxton CB10 1SA, United Kingdom;
Steven M J SearleWellcome Trust Sanger Institute, Hinxton CB10 1SA, United Kingdom;
Patrick MinxThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108;
LaDeana W HillierThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108;
Daniel C KoboldtThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108;
Brian W DavisDepartment of Veterinary Integrative Biosciences, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843;
Carlos A DriscollNational Institute on Alcohol Abuse and Alcoholism, National Institutes of Health, Bethesda, MD 20886;
Christina S BarrNational Institute on Alcohol Abuse and Alcoholism, National Institutes of Health, Bethesda, MD 20886;
Kevin BlackistoneNational Institute on Alcohol Abuse and Alcoholism, National Institutes of Health, Bethesda, MD 20886;
Javier QuilezCatalan Institution for Research and Advanced Studies, Institute of Evolutionary Biology, Pompeu Fabra University, 08003 Barcelona, Spain;
Belen Lorente-GaldosCatalan Institution for Research and Advanced Studies, Institute of Evolutionary Biology, Pompeu Fabra University, 08003 Barcelona, Spain;
Tomas Marques-BonetCatalan Institution for Research and Advanced Studies, Institute of Evolutionary Biology, Pompeu Fabra University, 08003 Barcelona, Spain; Centro de Analisis Genomico 08028, Barcelona, Spain;
Can AlkanDepartment of Computer Engineering, Bilkent University, Ankara 06800, Turkey;
Gregg W C ThomasDepartment of Biology, Indiana University, Bloomington, IN 47405;
Matthew W HahnDepartment of Biology, Indiana University, Bloomington, IN 47405;
Marilyn Menotti-RaymondLaboratory of Genomic Diversity, Center for Cancer Research, Frederick, MD 21702;
Stephen J O'BrienDobzhansky Center for Genome Bioinformatics, St. Petersburg State University, St. Petersburg 199178, Russia; and Oceanographic Center, Nova Southeastern University, Fort Lauderdale, FL 33314.
Richard K WilsonThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108;
Leslie A LyonsDepartment of Veterinary Medicine & Surgery, College of Veterinary Medicine, University of Missouri, Columbia, MO 65201; wwarren@genome.wustl.edu wmurphy@cvm.tamu.edu lyonsla@missouri.edu.
William J MurphyDepartment of Veterinary Integrative Biosciences, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843; wwarren@genome.wustl.edu wmurphy@cvm.tamu.edu lyonsla@missouri.edu.
Wesley C WarrenThe Genome Institute, Washington University School of Medicine, St. Louis, MO 63108; wwarren@genome.wustl.edu wmurphy@cvm.tamu.edu lyonsla@missouri.edu.
Washington University in St. Louis · USInstitució Catalana de Recerca i Estudis Avançats · ESNational Institutes of Health · USTexas A&M University · USIndiana University Bloomington · USMissouri College · USWellcome Sanger Institute · GBBilkent University · TRCenter for Cancer Research · USSt Petersburg University · RUUniversity of California, Davis · US

Funding

Large Scale Genome SequencingU54HG003079 · NHGRI · WASHINGTON UNIVERSITY · PI DUTCHER, SUSAN K · 2004 to 2016
$445.7M
Cross-Species Genetic and Epigenetic Studies of Stress Response and RewardZIAAA000311 · NIAAA · NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM · PI BARR, CHRISTINA · 2010 to 2020
$14.0M
Genetic Mapping Resources for Common Mammalian DiseasesR24RR016094 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI LYONS, LESLIE A · 2002 to 2011
$3.0M
Genetic Mapping Resources for Common Mammalian DiseasesR24OD010928 · OD · UNIVERSITY OF MISSOURI-COLUMBIA · PI LYONS, LESLIE A · 2012 to 2015
$911k
European Research Council 260372HSRD VA CDA 10-014NCRR NIH HHS R24 RR016094NHGRI NIH HHS U54 HG003079NHGRI NIH HHS U54HG003079NIH HHS R24 OD010928Wellcome Trust 095908
6 · The paper itself

Abstract

Little is known about the genetic changes that distinguish domestic cat populations from their wild progenitors. Here we describe a high-quality domestic cat reference genome assembly and comparative inferences made with other cat breeds, wildcats, and other mammals. Based upon these comparisons, we identified positively selected genes enriched for genes involved in lipid metabolism that underpin adaptations to a hypercarnivorous diet. We also found positive selection signals within genes underlying sensory processes, especially those affecting vision and hearing in the carnivore lineage. We observed an evolutionary tradeoff between functional olfactory and vomeronasal receptor gene repertoires in the cat and dog genomes, with an expansion of the feline chemosensory system for detecting pheromones at the expense of odorant detection. Genomic regions harboring signatures of natural selection that distinguish domestic cats from their wild congeners are enriched in neural crest-related genes associated with behavior and reward in mouse models, as predicted by the domestication syndrome hypothesis. Our description of a previously unidentified allele for the gloving pigmentation pattern found in the Birman breed supports the hypothesis that cat breeds experienced strong selection on specific mutations drawn from random bred populations. Collectively, these findings provide insight into how the process of domestication altered the ancestral wildcat genome and build a resource for future disease mapping and phylogenomic studies across all members of the Felidae.

Indexed as

Adaptation, PhysiologicalAmino Acid SequenceAnimalsAnimals, DomesticAnimals, WildCarnivoryCatsChromosome MappingDNA Copy Number VariationsDogsFemaleGene DeletionGene DuplicationGenomeGenomicsMaleMembrane Transport ProteinsdomesticationFelis catusgenome

Identifiers

PMID25385592
PMCPMC4260561
OpenAlexW2069681519

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.