Evidence map›Paper›PMID 25385530›Full record

ArticleeLife2014

Ionic selectivity and thermal adaptations within the voltage-gated sodium channel family of alkaliphilic Bacillus.

Paul G DeCaen, Yuka Takahashi, Terry A Krulwich, Masahiro Ito, David E Clapham

Open access · goldAbstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Ion channel selectivity through ion-modulated changes of selectivity filter pProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  7. Protein pJournal of chemical theory and computation · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. A Novel Single-Domain NaPlant physiology · 2020
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Global versus local mechanisms of temperature sensing in ion channels.Pflugers Archiv : European journal of physiology · 2018
    Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Paul G DeCaenDepartment of Cardiology, Howard Hughes Medical Institute, Boston Children's Hospital, Boston, United States.
Yuka TakahashiGraduate School of Life Sciences, Toyo University, Gunma, Japan.
Terry A KrulwichDepartment of Pharmacology and Systems Therapeutics, Icahn School of Medicine at Mount Sinai, New York, United States.
Masahiro ItoGraduate School of Life Sciences, Toyo University, Gunma, Japan.
David E ClaphamDepartment of Cardiology, Howard Hughes Medical Institute, Boston Children's Hospital, Boston, United States.
Boston Children's Hospital · USToyo University · JPIcahn School of Medicine at Mount Sinai · US

Funding

SYNAPTIC MECHANISMS IN HIPPOCAMPAL EPILEPTOGENESISP30HD018655 · NICHD · CHILDREN'S HOSPITAL BOSTON · PI POMEROY, SCOTT LOREN · 1985 to 2015
$26.2M
RESEARCH METHODS IN PEDIATRICS HEART DISEASET32HL007572 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI Sarah D DE FERRANTI, Jane W. Newburger · 1985 to 2026
$13.0M
PROTON COUPLING STRATEGIES IN ALKALIPHILIC BACILLUSR01GM028454 · NIGMS · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI KRULWICH, TERRY ANN · 1985 to 2017
$6.2M
NHLBI NIH HHS T32 HL007572NICHD NIH HHS P30 HD018655NIGMS NIH HHS R01 GM028454
6 · The paper itself

Abstract

Entry and extrusion of cations are essential processes in living cells. In alkaliphilic prokaryotes, high external pH activates voltage-gated sodium channels (Nav), which allows Na(+) to enter and be used as substrate for cation/proton antiporters responsible for cytoplasmic pH homeostasis. Here, we describe a new member of the prokaryotic voltage-gated Na(+) channel family (NsvBa; <underline>N</underline>on-<underline>s</underline>elective <underline>v</underline>oltage-gated, <underline>B</underline>acillus <underline>a</underline>lcalophilus) that is nonselective among Na(+), Ca(2+) and K(+) ions. Mutations in NsvBa can convert the nonselective filter into one that discriminates for Na(+) or divalent cations. Gain-of-function experiments demonstrate the portability of ion selectivity with filter mutations to other Bacillus Nav channels. Increasing pH and temperature shifts their activation threshold towards their native resting membrane potential. Furthermore, we find drugs that target Bacillus Nav channels also block the growth of the bacteria. This work identifies some of the adaptations to achieve ion discrimination and gating in Bacillus Nav channels.

Indexed as

Multigene FamilyTemperatureAdaptation, BiologicalAlkaliesAmino Acid SequenceBacillusCationsCell Membrane PermeabilityHydrogen-Ion ConcentrationMolecular Sequence DataMovementMutationSodium Channel BlockersVoltage-Gated Sodium ChannelsAlkaliesCationsSodium Channel BlockersVoltage-Gated Sodium Channelsantibioticsbacteria physiologybiochemical adaptationsbiophysicsevolutioninfectious diseaseion selectivitymicrobiologynonepharmacologystructural biology

Identifiers

PMID25385530
PMCPMC4225499
OpenAlexW2115557947

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.