Evidence map›Paper›PMID 25384482›Full record

ArticleJournal of bacteriology2015

Proline metabolism increases katG expression and oxidative stress resistance in Escherichia coli.

Lu Zhang, James R Alfano, Donald F Becker

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 101 citations in OpenAlex.

  1. Trial
  2. Metabolic profiling of Escherichia coli under deuterium oxide-induced stress.Metabolomics : Official journal of the Metabolomic Society · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. The Proline Dehydrogenase GeneInternational journal of molecular sciences · 2025
    Article
  11. Microorganisms · 2025
    Article
  12. Article
  13. Article
  14. Frontiers in microbiology · 2024
    Article
  15. Article
  16. Effects of FeMicrobial cell factories · 2023
    Article
  17. Critical Effect of HMicrobiology spectrum · 2022
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Lu ZhangDepartment of Biochemistry, University of Nebraska, Lincoln, Nebraska, USA Redox Biology Center, University of Nebraska, Lincoln, Nebraska, USA.
James R AlfanoDepartment of Plant Pathology, University of Nebraska, Lincoln, Nebraska, USA Redox Biology Center, University of Nebraska, Lincoln, Nebraska, USA Center for Plant Science Innovation, University of Nebraska, Lincoln, Nebraska, USA.
Donald F BeckerDepartment of Biochemistry, University of Nebraska, Lincoln, Nebraska, USA Redox Biology Center, University of Nebraska, Lincoln, Nebraska, USA dbecker3@unl.edu.
University of Nebraska–Lincoln · US

Funding

Redox Biology CenterP30GM103335 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI BECKER, DONALD F · 2012 to 2016
$4.3M
Spectroelectrochemistry of the Novel PutA FlavoproteinR01GM061068 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI BECKER, DONALD F · 2001 to 2015
$3.7M
Role of Proline in Redox Homeostasis and ApoptosisR01GM079393 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI BECKER, DONALD F · 2008 to 2011
$1.1M
NIGMS NIH HHS GM061068NIGMS NIH HHS GM079393NIGMS NIH HHS P30 GM103335NIGMS NIH HHS P30GM103335NIGMS NIH HHS R01 GM061068NIGMS NIH HHS R01 GM079393
6 · The paper itself

Abstract

The oxidation of l-proline to glutamate in Gram-negative bacteria is catalyzed by the proline utilization A (PutA) flavoenzyme, which contains proline dehydrogenase (PRODH) and Δ(1)-pyrroline-5-carboxylate (P5C) dehydrogenase domains in a single polypeptide. Previous studies have suggested that aside from providing energy, proline metabolism influences oxidative stress resistance in different organisms. To explore this potential role and the mechanism, we characterized the oxidative stress resistance of wild-type and putA mutant strains of Escherichia coli. Initial stress assays revealed that the putA mutant strain was significantly more sensitive to oxidative stress than the parental wild-type strain. Expression of PutA in the putA mutant strain restored oxidative stress resistance, confirming that depletion of PutA was responsible for the oxidative stress phenotype. Treatment of wild-type cells with proline significantly increased hydroperoxidase I (encoded by katG) expression and activity. Furthermore, the ΔkatG strain failed to respond to proline, indicating a critical role for hydroperoxidase I in the mechanism of proline protection. The global regulator OxyR activates the expression of katG along with several other genes involved in oxidative stress defense. In addition to katG, proline increased the expression of grxA (glutaredoxin 1) and trxC (thioredoxin 2) of the OxyR regulon, implicating OxyR in proline protection. Proline oxidative metabolism was shown to generate hydrogen peroxide, indicating that proline increases oxidative stress tolerance in E. coli via a preadaptive effect involving endogenous hydrogen peroxide production and enhanced catalase-peroxidase activity.

Indexed as

Oxidative StressStress, PhysiologicalBacterial ProteinsCatalaseEscherichia coliEscherichia coli ProteinsGene DeletionGene ExpressionMembrane ProteinsProlineBacterial ProteinsCatalaseEscherichia coli ProteinskatG protein, E coliMembrane ProteinsProlinePutA protein, Bacteria

Identifiers

PMID25384482
PMCPMC4285992
OpenAlexW2086648625

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.