Evidence map›Paper›PMID 25384479›Full record

ArticleJournal of bacteriology2015

The trpE gene negatively regulates differentiation of heterocysts at the level of induction in Anabaena sp. strain PCC 7120.

Patrick Videau, Loralyn M Cozy, Jasmine E Young, Blake Ushijima, Reid T Oshiro, Orion S Rivers, Andrew H Burger, Sean M Callahan

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Patrick VideauDepartment of Microbiology, University of Hawaii, Honolulu, Hawaii, USA.
Loralyn M CozyDepartment of Microbiology, University of Hawaii, Honolulu, Hawaii, USA.
Jasmine E YoungDepartment of Microbiology, University of Hawaii, Honolulu, Hawaii, USA.
Blake UshijimaDepartment of Microbiology, University of Hawaii, Honolulu, Hawaii, USA.
Reid T OshiroDepartment of Microbiology, University of Hawaii, Honolulu, Hawaii, USA.
Orion S RiversDepartment of Microbiology, University of Hawaii, Honolulu, Hawaii, USA.
Andrew H BurgerDepartment of Molecular Biosciences and Bioengineering, University of Hawaii, Honolulu, Hawaii, USA.
Sean M CallahanDepartment of Microbiology, University of Hawaii, Honolulu, Hawaii, USA Department of Molecular Biosciences and Bioengineering, University of Hawaii, Honolulu, Hawaii, USA scallaha@hawaii.edu.
University of Hawaii System · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Levels of 2-oxoglutarate (2-OG) reflect nitrogen status in many bacteria. In heterocystous cyanobacteria, a spike in the 2-OG level occurs shortly after the removal of combined nitrogen from cultures and is an integral part of the induction of heterocyst differentiation. In this work, deletion of one of the two annotated trpE genes in Anabaena sp. strain PCC 7120 resulted in a spike in the 2-OG level and subsequent differentiation of a wild-type pattern of heterocysts when filaments of the mutant were transferred from growth on ammonia to growth on nitrate. In contrast, 2-OG levels were unaffected in the wild type, which did not differentiate under the same conditions. An inverted-repeat sequence located upstream of trpE bound a central regulator of differentiation, HetR, in vitro and was necessary for HetR-dependent transcription of a reporter fusion and complementation of the mutant phenotype in vivo. Functional complementation of the mutant phenotype with the addition of tryptophan suggested that levels of tryptophan, rather than the demonstrated anthranilate synthase activity of TrpE, mediated the developmental response of the wild type to nitrate. A model is presented for the observed increase in 2-OG in the trpE mutant.

Indexed as

AnabaenaBacterial ProteinsGene Expression Regulation, BacterialBacterial Proteins

Identifiers

PMID25384479
PMCPMC4272594
OpenAlexW2027435004

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.