Evidence map›Paper›PMID 25383966›Full record

ArticlePloS one2014

A functional TNFAIP2 3'-UTR rs8126 genetic polymorphism contributes to risk of esophageal squamous cell carcinoma.

Jian Zhang, Hongchen Yu, Yi Zhang, Xiaoshi Zhang, Guixin Zheng, Yang Gao, Chuanxin Wang, Liqing Zhou

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 2 pooled it
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 2 syntheses or guidelines pooled it, 29 citations in OpenAlex.

  1. Pooled it
  2. Susceptibility ofTechnology in cancer research & treatment
    Pooled it
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  4. Assessment ofAnnals of medicine · 2024
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  11. The roles of TNFAIP2 in cancers and infectious diseases.Journal of cellular and molecular medicine · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jian ZhangDepartment of Clinical Laboratory, Qilu Hospital of Shandong University, Jinan, Shandong Province, China.
Hongchen YuQingdao Qilu Hospital, Shandong University, Qingdao, Shandong Province, China.
Yi ZhangDepartment of Clinical Laboratory, Qilu Hospital of Shandong University, Jinan, Shandong Province, China.
Xiaoshi ZhangDepartment of Clinical Laboratory, Qilu Hospital of Shandong University, Jinan, Shandong Province, China.
Guixin ZhengDepartment of Clinical Laboratory, Qilu Hospital of Shandong University, Jinan, Shandong Province, China.
Yang GaoDepartment of Clinical Laboratory, Qilu Hospital of Shandong University, Jinan, Shandong Province, China.
Chuanxin WangDepartment of Clinical Laboratory, Qilu Hospital of Shandong University, Jinan, Shandong Province, China.
Liqing ZhouDepartment of Radiation Oncology, Huaian No. 2 Hospital, Huaian, Jiangsu Province, China.
Qilu Hospital of Shandong University · CNHuaian First People’s Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAccumulated evidences demonstrated that single nucleotide polymorphisms (SNPs) in mRNA 3'-untranslated region (3'-UTR) may impact microRNAs (miRNAs)-mediated expression regulation of oncogenes and tumor suppressors. There is a TNFAIP2 3'-UTR rs8126 T>C genetic variant which has been proved to be associated with head and neck cancer susceptibility. This SNP could disturb binding of miR-184 with TNFAIP2 mRNA and influence TNFAIP2 regulation. However, it is still unclear how this polymorphism is involved in development of esophageal squamous cell carcinoma (ESCC). Therefore, we hypothesized that the functional TNFAIP2 rs8126 SNP may affect TNFAIP2 expression and, thus, ESCC risk.

methodsWe investigated the association between the TNFAIP2 rs8126 variant and ESCC risk as well as the functional relevance on TNFAIP2 expression in vivo. Genotypes were determined in a case-control set consisted of 588 ESCC patients and 600 controls. The allele-specific regulation on TNFAIP2 expression by the rs8126 SNP was examined in normal and cancerous tissue specimens of esophagus.

resultsWe found that individuals carrying the rs8126 CC or CT genotype had an OR of 1.89 (95%CI  = 1.23-2.85, P = 0.003) or 1.38 (95%CI  = 1.05-1.73, P = 0.017) for developing ESCC in Chinese compared with individual carrying the TT genotype. Carriers of the rs8126 CC and CT genotypes had significantly lower TNFAIP2 mRNA levels than those with the TT genotypes in normal esophagus tissues (P<0.05).

conclusionsOur data demonstrate that functional TNFAIP2 rs8126 genetic variant is a ESCC susceptibility SNP. These results support the hypothesis that genetic variants interrupting miRNA-mediated gene regulation might be important genetic modifiers of cancer risk.

Indexed as

3' Untranslated RegionsAsian PeopleCarcinoma, Squamous CellCytokinesEsophageal NeoplasmsEsophageal Squamous Cell CarcinomaGenotypeHumansOdds RatioPolymorphism, Single NucleotideReal-Time Polymerase Chain Reaction3' Untranslated RegionsCytokinesTNFAIP2 protein, human

Identifiers

PMID25383966
PMCPMC4226436
OpenAlexW2064227104

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.