Evidence map›Paper›PMID 25383878›Full record

ArticlePloS one2014

Identification of a PRPF4 loss-of-function variant that abrogates U4/U6.U5 tri-snRNP integration and is associated with retinitis pigmentosa.

Bastian Linder, Anja Hirmer, Andreas Gal, Klaus Rüther, Hanno Jörn Bolz, Christoph Winkler, Bernhard Laggerbauer, Utz Fischer

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 42 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Alternative RNA Splicing in the Retina: Insights and Perspectives.Cold Spring Harbor perspectives in medicine · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Genetic dissection of non-syndromic retinitis pigmentosa.Indian journal of ophthalmology · 2022
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Spliceosomopathies: Diseases and mechanisms.Developmental dynamics : an official publication of the American Association of Anatomists · 2020
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. RNA mis-splicing in disease.Nature reviews. Genetics · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Bastian LinderDepartment of Biochemistry, University of Würzburg, Würzburg, Germany.
Anja HirmerDepartment of Biochemistry, University of Würzburg, Würzburg, Germany.
Andreas GalDepartment of Human Genetics, University Medical Center Hamburg-Eppendorf, Hamburg, Germany.
Klaus RütherDepartment of Ophthalmology, Sankt Gertrauden-Krankenhaus, Berlin, Germany.
Hanno Jörn BolzInstitute of Human Genetics, University Hospital of Cologne, Cologne, Germany; Bioscientia Center for Human Genetics, Ingelheim, Germany.
Christoph WinklerDepartment of Biological Sciences, National University of Singapore, Singapore, Singapore.
Bernhard LaggerbauerDepartment of Biochemistry, University of Würzburg, Würzburg, Germany.
Utz FischerDepartment of Biochemistry, University of Würzburg, Würzburg, Germany.
University of Würzburg · DENational University of Singapore · SGSankt Gertrauden Krankenhaus · DEUniversität Hamburg · DEUniversity Hospital Cologne · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pre-mRNA splicing by the spliceosome is an essential step in the maturation of nearly all human mRNAs. Mutations in six spliceosomal proteins, PRPF3, PRPF4, PRPF6, PRPF8, PRPF31 and SNRNP200, cause retinitis pigmentosa (RP), a disease characterized by progressive photoreceptor degeneration. All splicing factors linked to RP are constituents of the U4/U6.U5 tri-snRNP subunit of the spliceosome, suggesting that the compromised function of this particle may lead to RP. Here, we report the identification of the p.R192H variant of the tri-snRNP factor PRPF4 in a patient with RP. The mutation affects a highly conserved arginine residue that is crucial for PRPF4 function. Introduction of a corresponding mutation into the zebrafish homolog of PRPF4 resulted in a complete loss of function in vivo. A series of biochemical experiments suggested that p.R192H disrupts the binding interface between PRPF4 and its interactor PRPF3. This interferes with the ability of PRPF4 to integrate into the tri-snRNP, as shown in a human cell line and in zebrafish embryos. These data suggest that the p.R192H variant of PRPF4 represents a functional null allele. The resulting haploinsufficiency of PRPF4 compromises the function of the tri-snRNP, reinforcing the notion that this spliceosomal particle is of crucial importance in the physiology of the retina.

Indexed as

Amino Acid SequenceAnimalsBase SequenceBlotting, WesternEmbryo, NonmammalianGangliosidesGene ComponentsHEK293 CellsHumansMolecular Sequence DataMutation, MissenseNuclear ProteinsPedigreeRetinitis PigmentosaRibonucleoprotein, U4-U6 Small NuclearSequence Analysis, DNA7-O-acetyl-GD3 gangliosideGangliosidesNuclear ProteinsPRPF3 protein, humanPRPF4 protein, humanRibonucleoprotein, U4-U6 Small Nuclear

Identifiers

PMID25383878
PMCPMC4226509
OpenAlexW2013462724

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.