Evidence map›Paper›PMID 25383525›Full record

ArticleNature2015

Structure and function of a single-chain, multi-domain long-chain acyl-CoA carboxylase.

Timothy H Tran, Yu-Shan Hsiao, Jeanyoung Jo, Chi-Yuan Chou, Lars E P Dietrich, Thomas Walz, Liang Tong

Open access · greenAbstract read
In one paragraph

Article in Nature, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Pathogens (Basel, Switzerland) · 2021
    Review
  7. Article
  8. Article
  9. Article
  10. Design and in vitro realization of carbon-conserving photorespiration.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Polyproteins in structural biology.Current opinion in structural biology · 2015
    Review
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Timothy H TranDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Yu-Shan HsiaoDepartment of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA.
Jeanyoung JoDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Chi-Yuan ChouDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Lars E P DietrichDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Thomas Walz1] Department of Cell Biology, Harvard Medical School, Boston, Massachusetts 02115, USA [2] Howard Hughes Medical Institute, Harvard Medical School, Boston, Massachusetts 02115, USA.
Liang TongDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Columbia University · USHarvard University · US

Funding

University of Georgia ProjectU54GM094597 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI ROST, BURKHARD · 2010 to 2014
$36.9M
Single particle reconstructionP01GM062580 · NIGMS · HARVARD MEDICAL SCHOOL · PI HARRISON, STEPHEN COPLAN · 2001 to 2016
$23.7M
CELLULAR AND MOLECULAR FOUNDATIONS OF BIOMEDICAL SCIENCET32GM008798 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRYWES, RON M · 2001 to 2018
$6.3M
Integration of redox-balancing mechanisms in Pseudomonas aeruginosa biofilmsR01AI103369 · NIAID · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DIETRICH, LARS · 2013 to 2022
$4.1M
Orchestra: A high performance biomedical supercomputing collaborativeS10RR028832 · NCRR · HARVARD MEDICAL SCHOOL · PI DANUSER, GAUDENZ · 2010 to 2010
$3.7M
Structural biology of enzymes in fatty acid metabolismR01DK067238 · NIDDK · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TONG, LIANG · 2004 to 2012
$2.6M
Replacement of an aging X-ray diffraction system for protein crystallographyS10OD012018 · OD · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI TONG, LIANG · 2012 to 2012
$405k
Howard Hughes Medical InstituteNCRR NIH HHS 1S10RR028832NCRR NIH HHS S10 RR028832NIAID NIH HHS R01 AI103369NIAID NIH HHS R01AI103369NIDDK NIH HHS R01 DK067238NIDDK NIH HHS R01DK067238NIGMS NIH HHS P01 GM062580NIGMS NIH HHS T32 GM008798NIGMS NIH HHS U54 GM094597NIGMS NIH HHS U54GM094597NIH HHS S10 OD012018NIH HHS S10OD012018
6 · The paper itself

Abstract

Biotin-dependent carboxylases are widely distributed in nature and have important functions in the metabolism of fatty acids, amino acids, carbohydrates, cholesterol and other compounds. Defective mutations in several of these enzymes have been linked to serious metabolic diseases in humans, and acetyl-CoA carboxylase is a target for drug discovery in the treatment of diabetes, cancer and other diseases. Here we report the identification and biochemical, structural and functional characterizations of a novel single-chain (120 kDa), multi-domain biotin-dependent carboxylase in bacteria. It has preference for long-chain acyl-CoA substrates, although it is also active towards short-chain and medium-chain acyl-CoAs, and we have named it long-chain acyl-CoA carboxylase. The holoenzyme is a homo-hexamer with molecular mass of 720 kDa. The 3.0 Å crystal structure of the long-chain acyl-CoA carboxylase holoenzyme from Mycobacterium avium subspecies paratuberculosis revealed an architecture that is strikingly different from those of related biotin-dependent carboxylases. In addition, the domains of each monomer have no direct contact with each other. They are instead extensively swapped in the holoenzyme, such that one cycle of catalysis involves the participation of four monomers. Functional studies in Pseudomonas aeruginosa suggest that the enzyme is involved in the utilization of selected carbon and nitrogen sources.

Indexed as

Acyl Coenzyme ABiocatalysisBiotinCarbonCarbon-Carbon LigasesCryoelectron MicroscopyCrystallography, X-RayHoloenzymesModels, MolecularMycobacterium avium subsp. paratuberculosisNitrogenProtein Structure, TertiaryProtein SubunitsPseudomonas aeruginosaStructure-Activity Relationshipacyl-CoA carboxylaseAcyl Coenzyme ABiotinCarbonCarbon-Carbon LigasesHoloenzymesNitrogenProtein Subunits

Identifiers

PMID25383525
PMCPMC4319993
OpenAlexW2077306255

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.