Evidence map›Paper›PMID 25383118›Full record

ArticleBeilstein journal of organic chemistry2014

A small azide-modified thiazole-based reporter molecule for fluorescence and mass spectrometric detection.

Stefanie Wolfram, Hendryk Würfel, Stefanie H Habenicht, Christine Lembke, Phillipp Richter, Eckhard Birckner, Rainer Beckert, Georg Pohnert

Abstract read
In one paragraph

Article in Beilstein journal of organic chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Chelating 5'-(Tetrahedron letters · 2025
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Stefanie WolframInstitute for Inorganic and Analytical Chemistry, Friedrich Schiller University, Lessingstr. 8, 07743 Jena, Germany.
Hendryk WürfelInstitute of Organic Chemistry and Macromolecular Chemistry, Friedrich Schiller University, Humboldtstr. 10, 07743 Jena, Germany.
Stefanie H HabenichtInstitute of Organic Chemistry and Macromolecular Chemistry, Friedrich Schiller University, Humboldtstr. 10, 07743 Jena, Germany.
Christine LembkeInstitute for Inorganic and Analytical Chemistry, Friedrich Schiller University, Lessingstr. 8, 07743 Jena, Germany.
Phillipp RichterInstitute for Inorganic and Analytical Chemistry, Friedrich Schiller University, Lessingstr. 8, 07743 Jena, Germany.
Eckhard BircknerInstitute for Physical Chemistry, Friedrich Schiller University, Helmholtzweg 4, 07743 Jena, Germany.
Rainer BeckertInstitute of Organic Chemistry and Macromolecular Chemistry, Friedrich Schiller University, Humboldtstr. 10, 07743 Jena, Germany.
Georg PohnertInstitute for Inorganic and Analytical Chemistry, Friedrich Schiller University, Lessingstr. 8, 07743 Jena, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular probes are widely used tools in chemical biology that allow tracing of bioactive metabolites and selective labeling of proteins and other biomacromolecules. A common structural motif for such probes consists of a reporter that can be attached by copper(I)-catalyzed 1,2,3-triazole formation between terminal alkynes and azides to a reactive headgroup. Here we introduce the synthesis and application of the new thiazole-based, azide-tagged reporter 4-(3-azidopropoxy)-5-(4-bromophenyl)-2-(pyridin-2-yl)thiazole for fluorescence, UV and mass spectrometry (MS) detection. This small fluorescent reporter bears a bromine functionalization facilitating the automated data mining of electrospray ionization MS runs by monitoring for its characteristic isotope signature. We demonstrate the universal utility of the reporter for the detection of an alkyne-modified small molecule by LC-MS and for the visualization of a model protein by in-gel fluorescence. The novel probe advantageously compares with commercially available azide-modified fluorophores and a brominated one. The ease of synthesis, small size, stability, and the universal detection possibilities make it an ideal reporter for activity-based protein profiling and functional metabolic profiling.

Indexed as

activity-based protein profiling (ABPP)bioorthogonalclick chemistrymass defectmolecular probe

Identifiers

PMID25383118
PMCPMC4222447

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.