Evidence map›Paper›PMID 25382611›Full record

ArticleBlood cancer journal2014

Hypermethylation of the tumor suppressor gene PRDM1/Blimp-1 supports a pathogenetic role in EBV-positive Burkitt lymphoma.

T Zhang, J Ma, K Nie, J Yan, Y Liu, C E Bacchi, E M Queiroga, G Gualco, J T Sample, A Orazi and 2 more

Open access · goldAbstract read
In one paragraph

Article in Blood cancer journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Emerging and re-emerging infectious disease in otorhinolaryngology.Acta otorhinolaryngologica Italica : organo ufficiale della Societa italiana di otorinolaringologia e chirurgia cervico-facciale · 2018
    Review
  14. Epstein-Barr virus: a master epigenetic manipulator.Current opinion in virology · 2017
    Review
  15. Article
  16. Article
  17. PRDM1 expression levels in marginal zone lymphoma and lymphoplasmacytic lymphoma.International journal of clinical and experimental pathology · 2017
    Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

T ZhangDepartment of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, USA.
J MaDepartment of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, USA.
K NieDepartment of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, USA.
J YanDepartment of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, USA.
Y LiuDepartment of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, USA.
C E BacchiConsultoria em Patologia, Botucatu, São Paulo, Brazil.
E M QueirogaConsultoria em Patologia, Botucatu, São Paulo, Brazil.
G GualcoConsultoria em Patologia, Botucatu, São Paulo, Brazil.
J T SampleDepartment of Microbiology and Immunology, Pennsylvania State University College of Medicine, The Penn State Hershey Cancer Institute, Hershey, PA, USA.
A OraziDepartment of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, USA.
D M KnowlesDepartment of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, USA.
W TamDepartment of Pathology and Laboratory Medicine, Weill Cornell Medical College, New York, NY, USA.
Cornell University · USLaboratório Bacchi · BRPenn State Milton S. Hershey Medical Center · USUniversity of Saskatchewan · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PRDM1/Blimp-1 is a tumor suppressor gene in the activated B-cell subtype of diffuse large B-cell lymphomas. Its inactivation contributes to pathogenesis in this setting by impairing terminal B-cell differentiation induced by constitutive nuclear factor-κB activation. The role of PRDM1 in Burkitt lymphoma (BL) lymphomagenesis is not known. Here we identified hypermethylation of the promoter region and exon 1 of PRDM1 in all six Epstein-Barr virus (EBV)-positive BL cell lines and 12 of 23 (52%) primary EBV-positive BL or BL-related cases examined, but in none of the EBV-negative BL cell lines or primary tumors that we assessed, implying a tumor suppressor role for PRDM1 specifically in EBV-associated BL. A direct induction of PRDM1 hypermethylation by EBV is unlikely, as PRDM1 hypermethylation was not observed in EBV-immortalized B lymphoblastoid cell lines. Treatment of EBV-positive BL cells with 5' azacytidine resulted in PRDM1 induction associated with PRDM1 demethylation, consistent with transcriptional silencing of PRDM1 as a result of DNA methylation. Overexpression of PRDM1 in EBV-positive BL cell lines resulted in cell cycle arrest. Our results expand the spectrum of lymphoid malignancies in which PRDM1 may have a tumor suppressor role and identify an epigenetic event that likely contributes to the pathogenesis of BL.

Indexed as

DNA MethylationHerpesvirus 4, HumanBurkitt LymphomaCell Line, TumorFemaleHumansMalePositive Regulatory Domain I-Binding Factor 1Repressor ProteinsTumor Suppressor ProteinsPositive Regulatory Domain I-Binding Factor 1PRDM1 protein, humanRepressor ProteinsTumor Suppressor Proteins

Identifiers

PMID25382611
PMCPMC4571983
OpenAlexW1964507957

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.