Evidence map›Paper›PMID 25382380›Full record

ArticleInternational journal of cancer2015

Inherited variation at MC1R and ASIP and association with melanoma-specific survival.

Nicholas J Taylor, Anne S Reiner, Colin B Begg, Anne E Cust, Klaus J Busam, Hoda Anton-Culver, Terence Dwyer, Lynn From, Richard P Gallagher, Stephen B Gruber and 9 more

Open access · greenAbstract read
In one paragraph

Article in International journal of cancer, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
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  3. Article
  4. Review
  5. Article
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  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Genetic analysis of melanocortin 1 receptor red hair color variants in a Russian population of Eastern Siberia.European journal of cancer prevention : the official journal of the European Cancer Prevention Organisation (ECP) · 2018
    Article
  13. Article
  14. Article
  15. The Expression Quantitative Trait Loci in Immune Pathways and their Effect on Cutaneous Melanoma Prognosis.Clinical cancer research : an official journal of the American Association for Cancer Research · 2016
    Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 12 institutions in 5 countries.

Nicholas J TaylorDepartment of Cancer Epidemiology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL.
Anne S Reiner
Colin B Begg
Anne E Cust
Klaus J Busam
Hoda Anton-Culver
Terence Dwyer
Lynn From
Richard P Gallagher
Stephen B Gruber
Stefano Rosso
Kirsten A White
Roberto Zanetti
Irene Orlow
Nancy E Thomas
Timothy R Rebbeck
Marianne Berwick
Peter A Kanetsky
GEM Study Group
Memorial Sloan Kettering Cancer Center · USMoffitt Cancer Center · USPiedmont Reference Center for Epidemiology and Cancer Prevention · ITUniversity of New Mexico · USBC Cancer Agency · CACancer Council NSW · AUCentre International de Recherche sur le Cancer · FRUniversity of California, Irvine · USUniversity of North Carolina at Chapel Hill · USUniversity of Pennsylvania · USUSC Norris Comprehensive Cancer Center · USWomen's College Hospital · CA

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
UNC-CH CENTER FOR ENVIRONMENTAL HEALTH &SUSCEPTIBILITYP30ES010126 · NIEHS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Melissa A. Troester · 2001 to 2026
$36.3M
Melanoma RAS/BRAF Mutation:Heterogeneity-Risk-PrognosisR01CA112243 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI THOMAS, NANCY E. · 2005 to 2014
$5.4M
A MODEL FOR GENETIC SUSCEPTIBILITY: MELANOMAU01CA083180 · NCI · UNIVERSITY OF NEW MEXICO · PI BERWICK, MARIANNE · 1999 to 2003
$5.2M
Solar Exposure and Melanoma SurvivalR01CA112524 · NCI · UNIVERSITY OF NEW MEXICO · PI BERWICK, MARIANNE · 2005 to 2009
$2.5M
Moffitt Postdoctoral Training Program in Molecular & Genetic EpidemiologyR25CA147832 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI EGAN, KATHLEEN M. · 2010 to 2014
$2.0M
Epidemiologic Parameters of Rare Cancer Risk FactorsR01CA098438 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI BEGG, COLIN B · 2003 to 2005
$839k
Melanoma Prevention: Using the SunK05CA131675 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI BERWICK, MARIANNE · 2011 to 2015
$795k
Moffitt Postdoctoral Training Program in Molecular EpidemiologyT32CA147832 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI KANETSKY, PETER A · 2015 to 2019
$659k
NCI NIH HHS K05 CA131675NCI NIH HHS P30 CA008748NCI NIH HHS P30CA008748NCI NIH HHS P30 CA016086NCI NIH HHS P30CA016086NCI NIH HHS R01 CA098438NCI NIH HHS R01CA098438NCI NIH HHS R01 CA112243NCI NIH HHS R01CA112243NCI NIH HHS R01CA112243-05S1NCI NIH HHS R01 CA112524NCI NIH HHS R01CA112524NCI NIH HHS R01CA112524-05S2NCI NIH HHS R25 CA147832NCI NIH HHS R25CA147832NCI NIH HHS T32 CA147832NCI NIH HHS U01 CA083180NCI NIH HHS U01CA83180NIEHS NIH HHS P30 ES010126
6 · The paper itself

Abstract

Melanocortin-1 receptor (MC1R) is a marker of melanoma risk in populations of European ancestry. However, MC1R effects on survival are much less studied. We investigated associations between variation at MC1R and survival in an international, population-based series of single primary melanoma patients enrolled into the Genes, Environment, and Melanoma study. MC1R genotype data was available for 2,200 participants with a first incident primary melanoma diagnosis. We estimated the association of MC1R genotypes with melanoma-specific survival (i.e., death caused by melanoma) and overall survival using COX proportional hazards modeling, adjusting for established prognostic factors for melanoma. We also conducted stratified analyses by Breslow thickness, tumor site, phenotypic index, and age. In addition, we evaluated haplotypes involving polymorphisms near the Agouti signaling protein gene (ASIP) locus for their impacts on survival. Melanoma-specific survival was inversely associated with carriage of MC1R variants in the absence of consensus alleles compared to carriage of at least one consensus allele (hazard ratio (HR) = 0.60; 95% confidence interval (CI): 0.40, 0.90). MC1R results for overall survival were consistent with no association. We did not observe any statistical evidence of heterogeneity of effect estimates in stratified analyses. We observed increased hazard of melanoma-specific death among carriers of the risk haplotype TG near the ASIP locus (HR = 1.37; 95% CI: 0.91, 2.04) when compared to carriers of the most common GG haplotype. Similar results were noted for overall survival. Upon examining the ASIP TG/TG diplotype, we observed considerably increased hazard of melanoma-specific death (HR = 5.11; 95% CI: 1.88, 13.88) compared to carriers of the most common GG/GG diplotype. Our data suggest improved melanoma-specific survival among carriers of two inherited MC1R variants.

Indexed as

AdultAgedAged, 80 and overAgouti Signaling ProteinFemaleGenetic Association StudiesGenetic VariationGenotypeHeredityHumansMaleMelanomaMiddle AgedPolymorphism, Single NucleotideProportional Hazards ModelsReceptor, Melanocortin, Type 1Agouti Signaling ProteinASIP protein, humanReceptor, Melanocortin, Type 1ASIPGEM studyMC1Rmelanomasurvival

Identifiers

PMID25382380
PMCPMC4361274
OpenAlexW1507780376

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.