Evidence map›Paper›PMID 25381655›Full record

ReviewPhotosynthesis research2015

Shedding new light on viral photosynthesis.

Richard J Puxty, Andrew D Millard, David J Evans, David J Scanlan

Abstract readReview
PubMed Publisher
In one paragraph

Review in Photosynthesis research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
5.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 102 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Adaptive Evolution Signatures inMicroorganisms · 2024
    Article
  13. Viral infection of an estuarineFrontiers in microbiology · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Richard J PuxtySchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
Andrew D MillardWarwick Medical School, University of Warwick, Coventry, CV4 7AL, UK.
David J EvansSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK.
David J ScanlanSchool of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK. d.j.scanlan@warwick.ac.uk.
University of Warwick · GBUniversity of California, Irvine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Viruses infecting the environmentally important marine cyanobacteria Prochlorococcus and Synechococcus encode 'auxiliary metabolic genes' (AMGs) involved in the light and dark reactions of photosynthesis. Here, we discuss progress on the inventory of such AMGs in the ever-increasing number of viral genome sequences as well as in metagenomic datasets. We contextualise these gene acquisitions with reference to a hypothesised fitness gain to the phage. We also report new evidence with regard to the sequence and predicted structural properties of viral petE genes encoding the soluble electron carrier plastocyanin. Viral copies of PetE exhibit extensive modifications to the N-terminal signal peptide and possess several novel residues in a region responsible for interaction with redox partners. We also highlight potential knowledge gaps in this field and discuss future opportunities to discover novel phage-host interactions involved in the photosynthetic process.

Indexed as

Genes, ViralPhotosynthesisAmino Acid SequenceBacterial ProteinsBacteriophagesGenome, ViralLightLight-Harvesting Protein ComplexesMolecular Sequence DataPhotosystem II Protein ComplexPhylogenyPigments, BiologicalPlastocyaninProchlorococcusSynechococcusBacterial Proteinshigh light-inducible protein, cyanobacteriaLight-Harvesting Protein ComplexesPhotosystem II Protein ComplexPigments, BiologicalPlastocyaninAuxiliary metabolic genesCyanophagePhotosynthesisPlastocyanin

Identifiers

PMID25381655
OpenAlexW2088504097

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.