Evidence map›Paper›PMID 25381236›Full record

ArticleApplied and environmental microbiology2015

Dehalococcoides mccartyi strain DCMB5 Respires a broad spectrum of chlorinated aromatic compounds.

Marlén Pöritz, Christian L Schiffmann, Gerd Hause, Ulrike Heinemann, Jana Seifert, Nico Jehmlich, Martin von Bergen, Ivonne Nijenhuis, Ute Lechner

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
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  6. Ultrastructure of Organohalide-RespiringApplied and environmental microbiology · 2022
    Article
  7. Research progress in bioremediation of petroleum pollution.Environmental science and pollution research international · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Marlén PöritzInstitute of Biology/Microbiology, Martin Luther University, Halle, Germany.
Christian L SchiffmannDepartment of Proteomics, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
Gerd HauseBiocentre, Martin Luther University, Halle, Germany.
Ulrike HeinemannInstitute of Biology/Microbiology, Martin Luther University, Halle, Germany.
Jana SeifertDepartment of Proteomics, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
Nico JehmlichDepartment of Proteomics, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
Martin von BergenDepartment of Proteomics, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany Department of Metabolomics, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany Department of Biotechnology, Chemistry and Environmental Engineering, Aalborg University, Aalborg, Denmark.
Ivonne NijenhuisDepartment of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
Ute LechnerInstitute of Biology/Microbiology, Martin Luther University, Halle, Germany ute.lechner@mikrobiologie.uni-halle.de.
Helmholtz Centre for Environmental Research · DEMartin Luther University Halle-Wittenberg · DEAalborg University · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polyhalogenated aromatic compounds are harmful environmental contaminants and tend to persist in anoxic soils and sediments. Dehalococcoides mccartyi strain DCMB5, a strain originating from dioxin-polluted river sediment, was examined for its capacity to dehalogenate diverse chloroaromatic compounds. Strain DCMB5 used hexachlorobenzenes, pentachlorobenzenes, all three tetrachlorobenzenes, and 1,2,3-trichlorobenzene as well as 1,2,3,4-tetra- and 1,2,4-trichlorodibenzo-p-dioxin as electron acceptors for organohalide respiration. In addition, 1,2,3-trichlorodibenzo-p-dioxin and 1,3-, 1,2-, and 1,4-dichlorodibenzo-p-dioxin were dechlorinated, the latter to the nonchlorinated congener with a remarkably short lag phase of 1 to 4 days following transfer. Strain DCMB5 also dechlorinated pentachlorophenol and almost all tetra- and trichlorophenols. Tetrachloroethene was dechlorinated to trichloroethene and served as an electron acceptor for growth. To relate selected dechlorination activities to the expression of specific reductive dehalogenase genes, the proteomes of 1,2,3-trichlorobenzene-, pentachlorobenzene-, and tetrachloroethene-dechlorinating cultures were analyzed. Dcmb_86, an ortholog of the chlorobenzene reductive dehalogenase CbrA, was the most abundant reductive dehalogenase during growth with each electron acceptor, suggesting its pivotal role in organohalide respiration of strain DCMB5. Dcmb_1041 was specifically induced, however, by both chlorobenzenes, whereas 3 putative reductive dehalogenases, Dcmb_1434, Dcmb_1339, and Dcmb_1383, were detected only in tetrachloroethene-grown cells. The proteomes also harbored a type IV pilus protein and the components for its assembly, disassembly, and secretion. In addition, transmission electron microscopy of DCMB5 revealed an irregular mode of cell division as well as the presence of pili, indicating that pilus formation is a feature of D. mccartyi during organohalide respiration.

Indexed as

ChloroflexiEnvironmental PollutantsHydrocarbons, ChlorinatedProteomeEnvironmental PollutantsHydrocarbons, ChlorinatedProteome

Identifiers

PMID25381236
PMCPMC4277595
OpenAlexW1978145539

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.