Evidence map›Paper›PMID 25381059›Full record

ArticleMolecular & cellular proteomics : MCP2015

Acetylome profiling reveals overlap in the regulation of diverse processes by sirtuins, gcn5, and esa1.

Michael Downey, Jeffrey R Johnson, Norman E Davey, Billy W Newton, Tasha L Johnson, Shastyn Galaang, Charles A Seller, Nevan Krogan, David P Toczyski

Open access · hybridAbstract read
In one paragraph

Article in Molecular & cellular proteomics : MCP, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 70 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Michael DowneyFrom the ‡Department of Biochemistry and Biophysics, University of California, San Francisco, 1450 3rd Street, San Francisco, CA, 94158; mdowne2@uottawa.ca.
Jeffrey R Johnson§Cellular and Molecular Pharmacology, University of California, San Francisco, 1700 4th Street, QB3, San Francisco, CA, 94158;
Norman E Davey¶Department of Physiology and Department of Biochemistry and Biophysics, University of California, San Francisco, CA 94158.
Billy W Newton§Cellular and Molecular Pharmacology, University of California, San Francisco, 1700 4th Street, QB3, San Francisco, CA, 94158;
Tasha L Johnson§Cellular and Molecular Pharmacology, University of California, San Francisco, 1700 4th Street, QB3, San Francisco, CA, 94158;
Shastyn GalaangFrom the ‡Department of Biochemistry and Biophysics, University of California, San Francisco, 1450 3rd Street, San Francisco, CA, 94158;
Charles A SellerFrom the ‡Department of Biochemistry and Biophysics, University of California, San Francisco, 1450 3rd Street, San Francisco, CA, 94158;
Nevan Krogan§Cellular and Molecular Pharmacology, University of California, San Francisco, 1700 4th Street, QB3, San Francisco, CA, 94158;
David P ToczyskiFrom the ‡Department of Biochemistry and Biophysics, University of California, San Francisco, 1450 3rd Street, San Francisco, CA, 94158;
University of California, San Francisco · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Rewiring Therapeutic Cells: User-Controlled T Cells and Stem CellsP50GM081879 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LIM, WENDELL A · 2010 to 2017
$19.0M
Regulation by post-translation modifications in response to stressR35GM118104 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI TOCZYSKI, DAVID PAUL · 2016 to 2025
$7.2M
Regulation and Targets of the DNA Damage CheckpointR01GM059691 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI TOCZYSKI, DAVID PAUL · 1999 to 2015
$5.8M
Comparative Analysis of Genetic Interaction NetworksR01GM084279 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY, KROGAN, NEVAN J · 2008 to 2017
$3.9M
Physical and Genetic Interaction Landscape of the Tyrosine KinomeR01GM107671 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BANDYOPADHYAY, SOURAV · 2014 to 2017
$1.8M
NIAID NIH HHS P30 AI027763NIGMS NIH HHS GM059691NIGMS NIH HHS P50 GM081879NIGMS NIH HHS R01 GM059691NIGMS NIH HHS R01 GM084279NIGMS NIH HHS R01 GM107671NIGMS NIH HHS R35 GM118104
6 · The paper itself

Abstract

Although histone acetylation and deacetylation machineries (HATs and HDACs) regulate important aspects of cell function by targeting histone tails, recent work highlights that non-histone protein acetylation is also pervasive in eukaryotes. Here, we use quantitative mass-spectrometry to define acetylations targeted by the sirtuin family, previously implicated in the regulation of non-histone protein acetylation. To identify HATs that promote acetylation of these sites, we also performed this analysis in gcn5 (SAGA) and esa1 (NuA4) mutants. We observed strong sequence specificity for the sirtuins and for each of these HATs. Although the Gcn5 and Esa1 consensus sequences are entirely distinct, the sirtuin consensus overlaps almost entirely with that of Gcn5, suggesting a strong coordination between these two regulatory enzymes. Furthermore, by examining global acetylation in an ada2 mutant, which dissociates Gcn5 from the SAGA complex, we found that a subset of Gcn5 targets did not depend on an intact SAGA complex for targeting. Our work provides a framework for understanding how HAT and HDAC enzymes collaborate to regulate critical cellular processes related to growth and division.

Indexed as

AcetylationHistone AcetyltransferasesHistone Deacetylasesp300-CBP-Associated FactorProteomeSaccharomyces cerevisiae ProteinsSirtuinsEsa1 protein, S cerevisiaeGCN5 protein, S cerevisiaeHistone AcetyltransferasesHistone Deacetylasesp300-CBP-Associated FactorProteomeSaccharomyces cerevisiae ProteinsSirtuins

Identifiers

PMID25381059
PMCPMC4288252
OpenAlexW2149626160

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.