Evidence map›Paper›PMID 25380056›Full record

ArticlePloS one2014

Metabolomics as a tool for discovery of biomarkers of autism spectrum disorder in the blood plasma of children.

Paul R West, David G Amaral, Preeti Bais, Alan M Smith, Laura A Egnash, Mark E Ross, Jessica A Palmer, Burr R Fontaine, Kevin R Conard, Blythe A Corbett and 3 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02548442 (Children's Autism Metabolome Project), which is not on this map. Cited by 87 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed, 3 pooled it
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02548442 unknown statusnot on this mapstarted 2015, after this paper: background citation

Children's Autism Metabolome Project (CAMP): Development and Clinical Evaluation of the Stemina Metabolic Biomarker-Based Test to Diagnose Autism Spectrum Disorder in Early Childhood

TypeobservationalSponsorStemina Biomarker Discovery, Inc.Ran2015 to 2023Enrolled1,102ConditionsAutism Spectrum Disorder, Developmental Disorder
3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 3 syntheses or guidelines pooled it, 151 citations in OpenAlex.

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  18. LC-HRMS Lipidomic Fingerprints in Serbian Cohort of Schizophrenia Patients.International journal of molecular sciences · 2024
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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Paul R WestStemina Biomarker Discovery, Madison, Wisconsin, United States of America.
David G AmaralThe M.I.N.D. Institute and Department of Psychiatry and Behavioral Sciences, University of California Davis, Davis, California, United States of America.
Preeti BaisThe Jackson Laboratory for Genomic medicine, University of Connecticut Health Center, Farmington, Connecticut, United States of America.
Alan M SmithStemina Biomarker Discovery, Madison, Wisconsin, United States of America.
Laura A EgnashStemina Biomarker Discovery, Madison, Wisconsin, United States of America.
Mark E RossStemina Biomarker Discovery, Madison, Wisconsin, United States of America.
Jessica A PalmerStemina Biomarker Discovery, Madison, Wisconsin, United States of America.
Burr R FontaineStemina Biomarker Discovery, Madison, Wisconsin, United States of America.
Kevin R ConardStemina Biomarker Discovery, Madison, Wisconsin, United States of America.
Blythe A CorbettDepartment of Psychiatry, Psychology and Kennedy Center, Vanderbilt University, Nashville, Tennessee, United States of America.
Gabriela G CezarStemina Biomarker Discovery, Madison, Wisconsin, United States of America.
Elizabeth L R DonleyStemina Biomarker Discovery, Madison, Wisconsin, United States of America.
Robert E BurrierStemina Biomarker Discovery, Madison, Wisconsin, United States of America.
Stemina Biomarker Discovery (United States) · USJackson Laboratory · USJohn F. Kennedy Center for the Performing Arts · USUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe diagnosis of autism spectrum disorder (ASD) at the earliest age possible is important for initiating optimally effective intervention. In the United States the average age of diagnosis is 4 years. Identifying metabolic biomarker signatures of ASD from blood samples offers an opportunity for development of diagnostic tests for detection of ASD at an early age.

objectivesTo discover metabolic features present in plasma samples that can discriminate children with ASD from typically developing (TD) children. The ultimate goal is to identify and develop blood-based ASD biomarkers that can be validated in larger clinical trials and deployed to guide individualized therapy and treatment.

methodsBlood plasma was obtained from children aged 4 to 6, 52 with ASD and 30 age-matched TD children. Samples were analyzed using 5 mass spectrometry-based methods designed to orthogonally measure a broad range of metabolites. Univariate, multivariate and machine learning methods were used to develop models to rank the importance of features that could distinguish ASD from TD.

resultsA set of 179 statistically significant features resulting from univariate analysis were used for multivariate modeling. Subsets of these features properly classified the ASD and TD samples in the 61-sample training set with average accuracies of 84% and 86%, and with a maximum accuracy of 81% in an independent 21-sample validation set.

conclusionsThis analysis of blood plasma metabolites resulted in the discovery of biomarkers that may be valuable in the diagnosis of young children with ASD. The results will form the basis for additional discovery and validation research for 1) determining biomarkers to develop diagnostic tests to detect ASD earlier and improve patient outcomes, 2) gaining new insight into the biochemical mechanisms of various subtypes of ASD 3) identifying biomolecular targets for new modes of therapy, and 4) providing the basis for individualized treatment recommendations.

Indexed as

Autism Spectrum DisorderBiomarkersChildChild, PreschoolChromatography, LiquidFemaleGas Chromatography-Mass SpectrometryHumansMachine LearningMaleMass SpectrometryMetabolomicsMultivariate AnalysisPrecision MedicineReproducibility of ResultsSensitivity and SpecificityBiomarkers

Identifiers

PMID25380056
PMCPMC4224480
OpenAlexW1965375056

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.