Evidence map›Paper›PMID 25380053›Full record

ArticlePloS one2014

The molecular epidemiological characteristics and genetic diversity of salmonella typhimurium in Guangdong, China, 2007-2011.

Jiufeng Sun, Bixia Ke, Yanhui Huang, Dongmei He, Xiaocui Li, Zhaoming Liang, Changwen Ke

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
6.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
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  15. Genomic Characterization ofFrontiers in microbiology · 2022
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  16. Genetic Characterization ofFrontiers in microbiology · 2021
    Article
  17. Article
  18. Characterization ofPathogens (Basel, Switzerland) · 2020
    Article
  19. Article
  20. Emergence and Dissemination ofMicroorganisms · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Jiufeng SunGuangdong Provincial Institute of Public Health, Guangdong Provincial Center for Disease Control and Prevention, Guangzhou, China.
Bixia KeInstitute of Microbiology, Guangdong Provincial Center for Disease Control and Prevention, Guangzhou, China.
Yanhui HuangDepartment of Epidemiology, School of Public Health and Tropical Medicine, Southern Medical University, Guangzhou, China.
Dongmei HeInstitute of Microbiology, Guangdong Provincial Center for Disease Control and Prevention, Guangzhou, China.
Xiaocui LiInstitute of Microbiology, Guangdong Provincial Center for Disease Control and Prevention, Guangzhou, China.
Zhaoming LiangInstitute of Microbiology, Guangdong Provincial Center for Disease Control and Prevention, Guangzhou, China.
Changwen KeInstitute of Microbiology, Guangdong Provincial Center for Disease Control and Prevention, Guangzhou, China.
Guangdong Provincial Center for Disease Control and Prevention · CNSouthern Medical University · CN

Funding

CGH CDC HHS U2G GH000018
6 · The paper itself

Abstract

backgroundSalmonella enterica serovar Typhimurium is the most important serovar associated with human salmonellosis worldwide. Here we aimed to explore the molecular epidemiology and genetic characteristics of this serovar in Guangdong, China. METHODOLOGY: We evaluated the molecular epidemiology and genetic characteristics of 294 endemic Salmonella Typhimurium clinical isolates which were collected from 1977 to 2011 in Guangdong, China, and compared them with a global set of isolates of this serovar using epidemiological data and Multilocus Sequence Typing (MLST) analysis. PRINCIPAL FINDING: The 294 isolates were assigned to 13 Sequencing types (STs) by MLST, of which ST34 and ST19 were the most common in Guangdong. All the STs were further assigned to two eBurst Groups, eBG1 and eBG138. The eBG1 was the major group endemic in Guangdong. Nucleotide and amino acid variability were comparable for all seven MLST loci. Tajima's D test suggested positive selection in hisD and thrA genes (p<0.01), but positive selection was rejected for the five other genes (p>0.05). In addition, The Tajima's D test within each eBG using the global set of isolates showed positive selection in eBG1 and eBG138 (p<0.05), but was rejected in eBG243 (p>0.05). We also analyzed the phylogenetic structure of Salmonella Typhimurium from worldwide sources and found that certain STs are geographically restricted. ACSSuT was the predominant multidrug resistance pattern for this serovar. The resistant profiles ACSSuTTmNaG, ACSSuTTmNa and ACSuTTmNaG seem to be specific for ST34, and ASSuTNa for ST19.

conclusionHere we presented a genotypic characterization of Salmonella Typhimurium isolates using MLST and found two major STs are endemic in Guangdong. Our analyses indicate that genetic selection may have shaped the Salmonella Typhimurium populations. However, further evaluation with additional isolates from various sources will be essential to reveal the scope of the epidemiological characteristics of Salmonella Typhimurium in Guangdong, China.

Indexed as

Endemic DiseasesGenetic VariationAnti-Bacterial AgentsAsian PeopleChinaDNA, BacterialGenotypeGeographyHumansMicrobial Sensitivity TestsMolecular EpidemiologyMultilocus Sequence TypingPhylogenySalmonella InfectionsSalmonella typhimuriumSequence Analysis, DNAAnti-Bacterial AgentsDNA, Bacterial

Identifiers

PMID25380053
PMCPMC4224511
OpenAlexW2133551848

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.