Evidence map›Paper›PMID 25379383›Full record

ArticleFEBS open bio2014

Structural and functional characterization of salmon STAT1, STAT2 and IRF9 homologs sheds light on interferon signaling in teleosts.

Mehrdad Sobhkhez, Astrid Skjesol, Ernst Thomassen, Linn Greiner Tollersrud, Dimitar B Iliev, Baojian Sun, Børre Robertsen, Jorunn B Jørgensen

Open access · goldAbstract read
In one paragraph

Article in FEBS open bio, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Viral Resistance and IFN Signaling in STAT2 Knockout Fish Cells.Journal of immunology (Baltimore, Md. : 1950) · 2019
    Article
  9. Review
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Mehrdad SobhkhezThe Norwegian College of Fishery Science, UiT The Arctic University of Norway, N-9037 Tromsø, Norway.
Astrid SkjesolThe Norwegian College of Fishery Science, UiT The Arctic University of Norway, N-9037 Tromsø, Norway.
Ernst ThomassenThe Norwegian College of Fishery Science, UiT The Arctic University of Norway, N-9037 Tromsø, Norway.
Linn Greiner TollersrudThe Norwegian College of Fishery Science, UiT The Arctic University of Norway, N-9037 Tromsø, Norway.
Dimitar B IlievThe Norwegian College of Fishery Science, UiT The Arctic University of Norway, N-9037 Tromsø, Norway.
Baojian SunThe Norwegian College of Fishery Science, UiT The Arctic University of Norway, N-9037 Tromsø, Norway.
Børre RobertsenThe Norwegian College of Fishery Science, UiT The Arctic University of Norway, N-9037 Tromsø, Norway.
Jorunn B JørgensenThe Norwegian College of Fishery Science, UiT The Arctic University of Norway, N-9037 Tromsø, Norway.
UiT The Arctic University of Norway · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mammalian IRF9 and STAT2, together with STAT1, form the ISGF3 transcription factor complex, which is critical for type I interferon (IFN)-induced signaling, while IFNγ stimulation is mediated by homodimeric STAT1 protein. Teleost fish are known to possess most JAK and STAT family members, however, description of their functional activity in lower vertebrates is still scarce. In the present study we have identified two different STAT2 homologs and one IRF9 homolog from Atlantic salmon (Salmo salar). Both proteins have domain-like structures with functional motifs that are similar to higher vertebrates, suggesting that they are orthologs to mammalian STAT2 and IRF9. The two identified salmon STAT2s, named STAT2a and STAT2b, showed high sequence identity but were divergent in their transactivation domain (TAD). Like STAT1, ectopically expressed STAT2a and b were shown to be tyrosine phosphorylated by type I IFNs and, interestingly, also by IFNγ. Microscopy analyses demonstrated that STAT2 co-localized with STAT1a in the cytoplasm of unstimulated cells, while IFNa1 and IFNγ stimulation seemed to favor their nuclear localization. Overexpression of STAT2a or STAT2b together with STAT1a activated a GAS-containing reporter gene construct in IFNγ-stimulated cells. The highest induction of GAS promoter activation was found in IFNγ-stimulated cells transfected with IRF9 alone. Taken together, these data suggest that salmon STAT2 and IRF9 may have a role in IFNγ-induced signaling and promote the expression of GAS-driven genes in bony fish. Since mammalian STAT2 is primarily an ISGF3 component and not involved in IFNγ signaling, our finding features a novel role for STAT2 in fish.

Indexed as

Atlantic salmonFishGAF, gamma interferon activation factorIAD, IRF-association domainIFNIFN, type I interferonIRF9IRF, interferon regulatory factorISGF3, IFN-stimulated gene factor 3ISRE, IFN-stimulated response elementNES, nuclear export signalNLS, nuclear localization signalSTAT2TAD, transcriptional activation domain

Identifiers

PMID25379383
PMCPMC4215117
OpenAlexW2107026049

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.