Evidence map›Paper›PMID 25379137›Full record

ArticleComputational and structural biotechnology journal2014

Identification of a metabolic biomarker panel in rats for prediction of acute and idiosyncratic hepatotoxicity.

Jinchun Sun, Svetoslav Slavov, Laura K Schnackenberg, Yosuke Ando, James Greenhaw, Xi Yang, William Salminen, Donna L Mendrick, Richard Beger

Open access · goldAbstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Observational
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  9. Review
  10. Biomarkers in DILI: One More Step Forward.Frontiers in pharmacology · 2016
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jinchun SunDivision of Systems Biology, National Center for Toxicological Research, US FDA, Jefferson, AR, United States.
Svetoslav SlavovDivision of Systems Biology, National Center for Toxicological Research, US FDA, Jefferson, AR, United States.
Laura K SchnackenbergDivision of Systems Biology, National Center for Toxicological Research, US FDA, Jefferson, AR, United States.
Yosuke AndoDivision of Systems Biology, National Center for Toxicological Research, US FDA, Jefferson, AR, United States.
James GreenhawDivision of Systems Biology, National Center for Toxicological Research, US FDA, Jefferson, AR, United States.
Xi YangDivision of Systems Biology, National Center for Toxicological Research, US FDA, Jefferson, AR, United States.
William SalminenDivision of Systems Biology, National Center for Toxicological Research, US FDA, Jefferson, AR, United States.
Donna L MendrickDivision of Systems Biology, National Center for Toxicological Research, US FDA, Jefferson, AR, United States.
Richard BegerDivision of Systems Biology, National Center for Toxicological Research, US FDA, Jefferson, AR, United States.
National Center for Toxicological Research · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It has been estimated that 10% of acute liver failure is due to "idiosyncratic hepatotoxicity". The inability to identify such compounds with classical preclinical markers of hepatotoxicity has driven the need to discover a mechanism-based biomarker panel for hepatotoxicity. Seven compounds were included in this study: two overt hepatotoxicants (acetaminophen and carbon tetrachloride), two idiosyncratic hepatotoxicants (felbamate and dantrolene), and three non-hepatotoxicants (meloxicam, penicillin and metformin). Male Sprague-Dawley rats were orally gavaged with a single dose of vehicle, low dose or high dose of the compounds. At 6 h and 24 h post-dosing, blood was collected for metabolomics and clinical chemistry analyses, while organs were collected for histopathology analysis. Forty-one metabolites from previous hepatotoxicity studies were semi-quantified and were used to build models to predict hepatotoxicity. The selected metabolites were involved in various pathways, which have been noted to be linked to the underlying mechanisms of hepatotoxicity. PLS models based on all 41 metabolite or smaller subsets of 6 (6 h), 7 (24 h) and 20 (6 h and 24 h) metabolites resulted in models with an accuracy of at least 97.4% for the hold-out test set and 100% for training sets. When applied to the external test sets, the PLS models predicted that 1 of 9 rats at both 6 h and 24 h treated with idiosyncratic liver toxicants was exposed to a hepatotoxic chemical. In conclusion, the biomarker panel might provide information that along with other endpoint data (e.g., transcriptomics and proteomics) may diagnose acute and idiosyncratic hepatotoxicity in a clinical setting.

Indexed as

Acute hepatotoxicityBiomarker panelIdiosyncratic hepatotoxicityMetabolomics

Identifiers

PMID25379137
PMCPMC4204381
OpenAlexW2061233349

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.