Evidence map›Paper›PMID 25379126›Full record

ArticleOnline journal of public health informatics2014

Emergency Medical Text Classifier: New system improves processing and classification of triage notes.

Stephanie W Haas, Debbie Travers, Anna Waller, Deepika Mahalingam, John Crouch, Todd A Schwartz, Javed Mostafa

Abstract read
In one paragraph

Article in Online journal of public health informatics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Using natural language processing in emergency medicine health service research: A systematic review and meta-analysis.Academic emergency medicine : official journal of the Society for Academic Emergency Medicine · 2024
    Pooled it
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  13. Implementation of Emergency Medical Text Classifier for syndromic surveillance.AMIA ... Annual Symposium proceedings. AMIA Symposium · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Stephanie W HaasSchool of Information and Library Science, University of North Carolina at Chapel Hill, NC.
Debbie TraversSchool of Nursing, University of North Carolina at Chapel Hill, NC ; School of Medicine, University of North Carolina at Chapel Hill, NC.
Anna WallerSchool of Medicine, University of North Carolina at Chapel Hill, NC.
Deepika MahalingamSchool of Nursing, University of North Carolina at Chapel Hill, NC.
John CrouchSchool of Medicine, University of North Carolina at Chapel Hill, NC.
Todd A SchwartzSchool of Nursing, University of North Carolina at Chapel Hill, NC ; School of Public Health, University of North Carolina at Chapel Hill, NC.
Javed MostafaSchool of Information and Library Science, University of North Carolina at Chapel Hill, NC ; School of Medicine, University of North Carolina at Chapel Hill, NC.

Funding

UNC Clinical and Translational Science AwardUL1TR000083 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RUNGE, MARSCHALL S. · 2012 to 2013
$11.6M
Adapting Natural Language Processing Tools for BiosurveillanceG08LM009787 · NLM · UNIV OF NORTH CAROLINA CHAPEL HILL · PI TRAVERS, DEBBIE A · 2009 to 2011
$441k
NCATS NIH HHS UL1 TR000083NLM NIH HHS G08 LM009787
6 · The paper itself

Abstract

objectiveAutomated syndrome classification aims to aid near real-time syndromic surveillance to serve as an early warning system for disease outbreaks, using Emergency Department (ED) data. We present a system that improves the automatic classification of an ED record with triage note into one or more syndrome categories using the vector space model coupled with a 'learning' module that employs a pseudo-relevance feedback mechanism. MATERIALS AND

methodsTerms from standard syndrome definitions are used to construct an initial reference dictionary for generating the syndrome and triage note vectors. Based on cosine similarity between the vectors, each record is classified into a syndrome category. We then take terms from the top-ranked records that belong to the syndrome of interest as feedback. These terms are added to the reference dictionary and the process is repeated to determine the final classification. The system was tested on two different datasets for each of three syndromes: Gastro-Intestinal (GI), Respiratory (Resp) and Fever-Rash (FR). Performance was measured in terms of sensitivity (Se) and specificity (Sp).

resultsThe use of relevance feedback produced high values of sensitivity and specificity for all three syndromes in both test sets: GI: 90% and 71%, Resp: 97% and 73%, FR: 100% and 87%, respectively, in test set 1, and GI: 88% and 69%, Resp: 87% and 61%, FR: 97% and 71%, respectively, in test set 2.

conclusionsThe new system for pre-processing and syndromic classification of ED records with triage notes achieved improvements in Se and Sp. Our results also demonstrate that the system can be tuned to achieve different levels of performance based on user requirements.

Indexed as

Disease outbreakselectronic health records/classificationmachine learningnatural language processingpublic health informaticspublic health surveillance/methods

Identifiers

PMID25379126
PMCPMC4221085

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.