Evidence map›Paper›PMID 25379055›Full record

ArticleBiotechnology for biofuels2014

The exometabolome of Clostridium thermocellum reveals overflow metabolism at high cellulose loading.

Evert K Holwerda, Philip G Thorne, Daniel G Olson, Daniel Amador-Noguez, Nancy L Engle, Timothy J Tschaplinski, Johannes P van Dijken, Lee R Lynd

Abstract read
In one paragraph

Article in Biotechnology for biofuels, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed.

  1. Article
  2. EngineeringMetabolic engineering communications · 2026
    Article
  3. Article
  4. EngineeringbioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. The potential of native and engineered Clostridia for biomass biorefining.Frontiers in bioengineering and biotechnology · 2024
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Evert K HolwerdaThayer School of Engineering, Dartmouth College, Hanover, NH 03755 USA ; BioEnergy Science Center, Oak Ridge, TN 37830 USA.
Philip G ThorneMascoma Corporation, Lebanon, NH 03766 USA.
Daniel G OlsonThayer School of Engineering, Dartmouth College, Hanover, NH 03755 USA ; BioEnergy Science Center, Oak Ridge, TN 37830 USA.
Daniel Amador-NoguezDepartment of Bacteriology, University of Wisconsin-Madison, Madison, WI 53706 USA.
Nancy L EngleBioEnergy Science Center, Oak Ridge, TN 37830 USA ; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830 USA.
Timothy J TschaplinskiBioEnergy Science Center, Oak Ridge, TN 37830 USA ; Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830 USA.
Johannes P van DijkenEmeritus Industrial Biotechnology of Delft University of Technology, Delft, BC 2628 The Netherlands.
Lee R LyndThayer School of Engineering, Dartmouth College, Hanover, NH 03755 USA ; BioEnergy Science Center, Oak Ridge, TN 37830 USA ; Mascoma Corporation, Lebanon, NH 03766 USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundClostridium thermocellum is a model thermophilic organism for the production of biofuels from lignocellulosic substrates. The majority of publications studying the physiology of this organism use substrate concentrations of ≤10 g/L. However, industrially relevant concentrations of substrate start at 100 g/L carbohydrate, which corresponds to approximately 150 g/L solids. To gain insight into the physiology of fermentation of high substrate concentrations, we studied the growth on, and utilization of high concentrations of crystalline cellulose varying from 50 to 100 g/L by C. thermocellum.

resultsUsing a defined medium, batch cultures of C. thermocellum achieved 93% conversion of cellulose (Avicel) initially present at 100 g/L. The maximum rate of substrate utilization increased with increasing substrate loading. During fermentation of 100 g/L cellulose, growth ceased when about half of the substrate had been solubilized. However, fermentation continued in an uncoupled mode until substrate utilization was almost complete. In addition to commonly reported fermentation products, amino acids - predominantly L-valine and L-alanine - were secreted at concentrations up to 7.5 g/L. Uncoupled metabolism was also accompanied by products not documented previously for C. thermocellum, including isobutanol, meso- and RR/SS-2,3-butanediol and trace amounts of 3-methyl-1-butanol, 2-methyl-1-butanol and 1-propanol. We hypothesize that C. thermocellum uses overflow metabolism to balance its metabolism around the pyruvate node in glycolysis.

conclusionsC. thermocellum is able to utilize industrially relevant concentrations of cellulose, up to 93 g/L. We report here one of the highest degrees of crystalline cellulose utilization observed thus far for a pure culture of C. thermocellum, the highest maximum substrate utilization rate and the highest amount of isobutanol produced by a wild-type organism.

Indexed as

2,3-butanediolAmino acidsCellulose fermentationClostridium thermocellumFusel alcoholsHigh solidsIsobutanol

Identifiers

PMID25379055
PMCPMC4207885

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.