ArticleJournal of ginseng research2014
Transcriptome profiling and comparative analysis of Panax ginseng adventitious roots.
Article in Journal of ginseng research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed, 61 citations in OpenAlex.
- First-year seasonal growth regulation mechanism underlying storage root thickening in perennialJournal of ginseng research · 2026Article
- Uncovering early transcriptional regulation during adventitious root formation in Medicago sativa.BMC plant biology · 2023Article
- Comparative Transcriptome Analysis Provides Insights into the Molecular Mechanism Underlying the Effect of MeJA Treatment on the Biosynthesis of Saikosaponins inLife (Basel, Switzerland) · 2023Article
- Comparative transcriptome and metabolome analyses of fourJournal of ginseng research · 2023Article
- Prolonged Exposure to High Temperature Inhibits Shoot Primary and Root Secondary Growth inInternational journal of molecular sciences · 2022Article
- Upcoming progress of transcriptomics studies on plants: An overview.Frontiers in plant science · 2022Review
- Gibberellin Signaling Promotes the Secondary Growth of Storage Roots inInternational journal of molecular sciences · 2021Article
- A candidate gene identified in converting platycoside E to platycodin D from Platycodon grandiflorus by transcriptome and main metabolites analysis.Scientific reports · 2021Article
- Dynamic evolution of Panax species.Genes & genomics · 2021Review
- Research Progress and Future Development Trends in Medicinal Plant Transcriptomics.Frontiers in plant science · 2021Review
- Transcriptome analysis for molecular landscaping of genes controlling diterpene andrographolide biosynthesis in3 Biotech · 2020Article
- Genetic diversity among cultivated and wildJournal of ginseng research · 2020Article
- Transcriptome analysis ofJournal of ginseng research · 2020Article
- Till 2018: a survey of biomolecular sequences in genusJournal of ginseng research · 2020Review
- Transcriptional profiling of contrasting genotypes revealed key candidates and nucleotide variations for drought dissection in Camellia sinensis (L.) O. Kuntze.Scientific reports · 2019Article
- Molecular authentication ofSaudi journal of biological sciences · 2019Article
- Identification of candidate UDP-glycosyltransferases involved in protopanaxadiol-type ginsenoside biosynthesis in Panax ginseng.Scientific reports · 2018Article
- Ginseng Genome Database: an open-access platform for genomics of Panax ginseng.BMC plant biology · 2018Article
- Isoform Sequencing Provides a More Comprehensive View of the Panax ginseng Transcriptome.Genes · 2017Article
- Rapid amplification of four retrotransposon families promoted speciation and genome size expansion in the genus Panax.Scientific reports · 2017Article
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Authors and funding
11 authors at 4 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundPanax ginseng Meyer is a traditional medicinal plant famous for its strong therapeutic effects and serves as an important herbal medicine. To understand and manipulate genes involved in secondary metabolic pathways including ginsenosides, transcriptome profiling of P. ginseng is essential.
methodsRNA-seq analysis of adventitious roots of two P. ginseng cultivars, Chunpoong (CP) and Cheongsun (CS), was performed using the Illumina HiSeq platform. After transcripts were assembled, expression profiling was performed.
resultsAssemblies were generated from ∼85 million and ∼77 million high-quality reads from CP and CS cultivars, respectively. A total of 35,527 and 27,716 transcripts were obtained from the CP and CS assemblies, respectively. Annotation of the transcriptomes showed that approximately 90% of the transcripts had significant matches in public databases. We identified several candidate genes involved in ginsenoside biosynthesis. In addition, a large number of transcripts (17%) with different gene ontology designations were uniquely detected in adventitious roots compared to normal ginseng roots.
conclusionThis study will provide a comprehensive insight into the transcriptome of ginseng adventitious roots, and a way for successful transcriptome analysis and profiling of resource plants with less genomic information. The transcriptome profiling data generated in this study are available in our newly created adventitious root transcriptome database (http://im-crop.snu.ac.kr/transdb/index.php) for public use.
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