Evidence map›Paper›PMID 25377711›Full record

ArticleGenome announcements2014

Whole-Genome Sequences of Five Oligotrophic Bacteria Isolated from Deep within Lechuguilla Cave, New Mexico.

Huan You Gan, Han Ming Gan, Alexander Mario Tarasco, Nurfatini Idayu Busairi, Hazel A Barton, André O Hudson, Michael A Savka

Open access · diamondAbstract read
In one paragraph

Article in Genome announcements, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Draft Genome Sequences of Six Type Strains of the GenusMicrobiology resource announcements · 2020
    Article
  4. Article
  5. Article
  6. Draft Genome Sequences of FiveMicrobiology resource announcements · 2019
    Article
  7. Article
  8. Article
  9. Article
  10. Draft genome sequence ofStandards in genomic sciences · 2018
    Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Huan You GanSchool of Science, Monash University Malaysia, Jalan Lagoon Selatan, Bandar Sunway, Petaling Jaya, Selangor, Malaysia.
Han Ming GanSchool of Science, Monash University Malaysia, Jalan Lagoon Selatan, Bandar Sunway, Petaling Jaya, Selangor, Malaysia.
Alexander Mario TarascoThe Thomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, New York, USA.
Nurfatini Idayu BusairiThe Thomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, New York, USA.
Hazel A BartonDepartment of Biology, University of Akron, Akron, Ohio, USA.
André O HudsonThe Thomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, New York, USA.
Michael A SavkaThe Thomas H. Gosnell School of Life Sciences, Rochester Institute of Technology, Rochester, New York, USA massbi@rit.edu.
Rochester Institute of Technology · USMonash University Malaysia · MYUniversity of Akron · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here, we report the whole-genome sequences and annotation of five oligotrophic bacteria from two sites within the Lechuguilla Cave in the Carlsbad Caverns National Park, NM. Three of the five genomes contain an acyl-homoserine lactone signal synthase ortholog (luxI) that is involved in cell-to-cell communication via quorum sensing.

Identifiers

PMID25377711
PMCPMC4223462
OpenAlexW2104480590

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.