Evidence map›Paper›PMID 25377458›Full record

ArticleProceedings. Biological sciences2014

The nutritionally responsive transcriptome of the polyphenic beetle Onthophagus taurus and the importance of sexual dimorphism and body region.

Teiya Kijimoto, Emilie C Snell-Rood, Melissa H Pespeni, Guilherme Rocha, Karen Kafadar, Armin P Moczek

Abstract read
In one paragraph

Article in Proceedings. Biological sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Ageing desexualizes theProceedings. Biological sciences · 2022
    Article
  5. Article
  6. Proceedings. Biological sciences · 2021
    Article
  7. Article
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  9. Review
  10. Article
  11. Review
  12. Animal behaviour · 2017
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Teiya KijimotoDepartment of Biology, Indiana University, 915 East Third St., Bloomington, IN 47405, USA.
Emilie C Snell-RoodDepartment of Biology, Indiana University, 915 East Third St., Bloomington, IN 47405, USA Department of Ecology, Evolution and Behavior, University of Minnesota, St Paul, MN 55108, USA.
Melissa H PespeniDepartment of Biology, Indiana University, 915 East Third St., Bloomington, IN 47405, USA.
Guilherme RochaDepartment of Statistics, Indiana University, 309 North Park Avenue, Bloomington, IN 47408, USA.
Karen KafadarDepartment of Statistics, Indiana University, 309 North Park Avenue, Bloomington, IN 47408, USA.
Armin P MoczekDepartment of Biology, Indiana University, 915 East Third St., Bloomington, IN 47405, USA armin@indiana.edu.

Funding

Modularity of gene expression and tradeoffs in the evolution of plasticityF32GM083830 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI SNELL-ROOD, EMILIE · 2008 to 2010
$143k
NIGMS NIH HHS F32GM083830
6 · The paper itself

Abstract

Developmental responses to nutritional variation represent one of the ecologically most important classes of adaptive plasticity. However, knowledge of genome-wide patterns of nutrition-responsive gene expression is limited. Here, we studied genome-wide transcriptional responses to nutritional variation and their dependency on trait and sex in the beetle Onthophagus taurus. We find that averaged across the transcriptome, nutrition contributes less to overall variation in gene expression than do sex or body region, but that for a modest subset of genes nutrition is by far the most important determinant of expression variation. Furthermore, our results reject the hypothesis that a common machinery may underlie nutrition-sensitive development across body regions. Instead, we find that magnitude (measured by number of differentially expressed contigs), composition (measured by functional enrichment) and evolutionary consequences (measured by patterns of sequence variation) are heavily dependent on exactly which body region is considered and the degree of sexual dimorphism observed on a morphological level. More generally, our findings illustrate that studies into the developmental mechanisms and evolutionary consequences of nutrition-biased gene expression must take into account the dynamics and complexities imposed by other sources of variation in gene expression such as sexual dimorphism and trait type.

Indexed as

Sex CharacteristicsTranscriptomeAdaptation, PhysiologicalAnimal Nutritional Physiological PhenomenaAnimalsBody SizeColeopteraFemaleMaleconditiondevelopmental plasticityhorned beetlesnutritional variationpolyphenismsquare combining table

Identifiers

PMID25377458
PMCPMC4240995

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.