Evidence map›Paper›PMID 25375769›Full record

ArticleBiochemistry2014

Light-driven Na(+) pump from Gillisia limnaea: a high-affinity Na(+) binding site is formed transiently in the photocycle.

Sergei P Balashov, Eleonora S Imasheva, Andrei K Dioumaev, Jennifer M Wang, Kwang-Hwan Jung, Janos K Lanyi

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 88 citations in OpenAlex.

  1. Article
  2. Mechanistic insights into NaThe Journal of biological chemistry · 2026
    Article
  3. Article
  4. Article
  5. NaMolecules (Basel, Switzerland) · 2023
    Review
  6. KInternational journal of molecular sciences · 2023
    Article
  7. Article
  8. Potassium-selective channelrhodopsins.Biophysics and physicobiology · 2023
    Article
  9. Review
  10. Article
  11. Review
  12. Microbial Rhodopsins.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Bacteriorhodopsin-like channelrhodopsins: Alternative mechanism for control of cation conductance.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Sergei P BalashovDepartment of Physiology and Biophysics, University of California , Irvine, California 92697, United States.
Eleonora S Imasheva
Andrei K Dioumaev
Jennifer M Wang
Kwang-Hwan Jung
Janos K Lanyi
University of California, Irvine · USSogang University · KR

Funding

LIGHT-DRIVEN ION TRANSPORT IN BACTERIAL RHODOPSINSR37GM029498 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANYI, JANOS K · 2000 to 2009
$4.5M
MECHANISM OF CHLORIDE TRANSPORT BY HALORHODOPSINR01GM029498 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANYI, JANOS K · 1985 to 2013
$2.1M
NIGMS NIH HHS GM29498
6 · The paper itself

Abstract

A group of microbial retinal proteins most closely related to the proton pump xanthorhodopsin has a novel sequence motif and a novel function. Instead of, or in addition to, proton transport, they perform light-driven sodium ion transport, as reported for one representative of this group (KR2) from Krokinobacter. In this paper, we examine a similar protein, GLR from Gillisia limnaea, expressed in Escherichia coli, which shares some properties with KR2 but transports only Na(+). The absorption spectrum of GLR is insensitive to Na(+) at concentrations of ≤3 M. However, very low concentrations of Na(+) cause profound differences in the decay and rise time of photocycle intermediates, consistent with a switch from a "Na(+)-independent" to a "Na(+)-dependent" photocycle (or photocycle branch) at ∼60 μM Na(+). The rates of photocycle steps in the latter, but not the former, are linearly dependent on Na(+) concentration. This suggests that a high-affinity Na(+) binding site is created transiently after photoexcitation, and entry of Na(+) from the bulk to this site redirects the course of events in the remainder of the cycle. A greater concentration of Na(+) is needed for switching the reaction path at lower pH. The data suggest therefore competition between H(+) and Na(+) to determine the two alternative pathways. The idea that a Na(+) binding site can be created at the Schiff base counterion is supported by the finding that upon perturbation of this region in the D251E mutant, Na(+) binds without photoexcitation. Binding of Na(+) to the mutant shifts the chromophore maximum to the red like that of H(+), which occurs in the photocycle of the wild type.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionAspartic AcidBacterial ProteinsBinding SitesFlavobacteriaceaeHydrogen-Ion ConcentrationKineticsMolecular Sequence DataMutagenesis, Site-DirectedPhotochemical ProcessesRecombinant ProteinsRhodopsins, MicrobialSchiff BasesSequence Homology, Amino AcidSodiumAspartic AcidBacterial ProteinsRecombinant ProteinsRhodopsins, MicrobialSchiff BasesSodiumSodium-Potassium-Exchanging ATPase

Identifiers

PMID25375769
PMCPMC4263435
OpenAlexW2316870514

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.