Evidence map›Paper›PMID 25375361›Full record

ArticlePLoS genetics2014

Genomic evidence of rapid and stable adaptive oscillations over seasonal time scales in Drosophila.

Alan O Bergland, Emily L Behrman, Katherine R O'Brien, Paul S Schmidt, Dmitri A Petrov

Abstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 277 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
277citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

277 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Climate predictsbioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. A century of theories of balancing selection.Biological reviews of the Cambridge Philosophical Society · 2026
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Early life-stage thermal resilience is determined by climate-linked regulatory variation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  18. Non-uniform chromosomal SNP density biases sites of meiotic crossovers inbioRxiv : the preprint server for biology · 2025
    Article
  19. Article
  20. Article

217 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alan O BerglandDepartment of Biology, Stanford University, Stanford, California, United States of America.
Emily L BehrmanDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Katherine R O'BrienDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Paul S SchmidtDepartment of Biology, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America.
Dmitri A PetrovDepartment of Biology, Stanford University, Stanford, California, United States of America.

Funding

Genomics of rapid adaptation on seasonal timescales in D. melanogasterR01GM100366 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI SCHMIDT, PAUL · 2012 to 2019
$3.3M
Sequencing yeast lines to measure rates of neutral and deleterious mutationsR01GM097415 · NIGMS · NEW YORK UNIVERSITY · PI PETROV, DMITRI, SIEGAL, MARK L · 2011 to 2014
$2.3M
Genomics of natural populationsF32GM097837 · NIGMS · STANFORD UNIVERSITY · PI BERGLAND, ALAN OLAV · 2011 to 2013
$148k
NIGMS NIH HHS F32 GM097837NIGMS NIH HHS F32GM097837NIGMS NIH HHS R01 GM097415NIGMS NIH HHS R01GM097415NIGMS NIH HHS R01 GM100366NIGMS NIH HHS R01GM100366
6 · The paper itself

Abstract

In many species, genomic data have revealed pervasive adaptive evolution indicated by the fixation of beneficial alleles. However, when selection pressures are highly variable along a species' range or through time adaptive alleles may persist at intermediate frequencies for long periods. So called "balanced polymorphisms" have long been understood to be an important component of standing genetic variation, yet direct evidence of the strength of balancing selection and the stability and prevalence of balanced polymorphisms has remained elusive. We hypothesized that environmental fluctuations among seasons in a North American orchard would impose temporally variable selection on Drosophila melanogaster that would drive repeatable adaptive oscillations at balanced polymorphisms. We identified hundreds of polymorphisms whose frequency oscillates among seasons and argue that these loci are subject to strong, temporally variable selection. We show that these polymorphisms respond to acute and persistent changes in climate and are associated in predictable ways with seasonally variable phenotypes. In addition, our results suggest that adaptively oscillating polymorphisms are likely millions of years old, with some possibly predating the divergence between D. melanogaster and D. simulans. Taken together, our results are consistent with a model of balancing selection wherein rapid temporal fluctuations in climate over generational time promotes adaptive genetic diversity at loci underlying polygenic variation in fitness related phenotypes.

Indexed as

Gene-Environment InteractionPolymorphism, GeneticAllelesAnimalsClimate ChangeDrosophila melanogasterGenetic FitnessGenome, InsectNorth AmericaPhenotypeSeasonsSelection, GeneticSpecies Specificity

Identifiers

PMID25375361
PMCPMC4222749

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.