Evidence map›Paper›PMID 25375110›Full record

ArticlePLoS genetics2014

A germline polymorphism of thymine DNA glycosylase induces genomic instability and cellular transformation.

Ashley Sjolund, Antonia A Nemec, Nicolas Paquet, Aishwarya Prakash, Patrick Sung, Sylvie Doublié, Joann B Sweasy

Abstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
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  9. Article
  10. Article
  11. Base Excision Repair Variants in Cancer.Methods in enzymology · 2017
    Article
  12. Article
  13. Article
  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ashley SjolundDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Antonia A NemecDepartment of Therapeutic Radiology, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Nicolas PaquetDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Aishwarya PrakashDepartment of Microbiology and Molecular Genetics, University of Vermont, Burlington, Vermont, United States of America.
Patrick SungDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, Connecticut, United States of America.
Sylvie DoubliéDepartment of Microbiology and Molecular Genetics, University of Vermont, Burlington, Vermont, United States of America.
Joann B SweasyDepartment of Genetics, Yale University School of Medicine, New Haven, Connecticut, United States of America; Department of Therapeutic Radiology, Yale University School of Medicine, New Haven, Connecticut, United States of America; Department of Microbiology and Molecular Genetics, University of Vermont, Burlington, Vermont, United States of America.

Funding

Yale University Clinical and Translational Science Award ProgramUL1TR000142 · NCATS · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2012 to 2015
$31.8M
SUBSTRATE SPECIFICITY OF THE BER OXIDATIVE DNA GLYCOSYLASESP01CA098993 · NCI · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI DRAGON, JULIE · 2004 to 2021
$25.9M
Repair of Environmentally and Endogenously Induced Mitochondrial-DNA DamageK99ES024417 · NIEHS · UNIVERSITY OF VERMONT & ST AGRIC COLLEGE · PI PRAKASH, AISHWARYA · 2014 to 2015
$171k
NCATS NIH HHS UL1 TR000142NCI NIH HHS P01 CA098993NIEHS NIH HHS K99 ES024417
6 · The paper itself

Abstract

Thymine DNA glycosylase (TDG) functions in base excision repair, a DNA repair pathway that acts in a lesion-specific manner to correct individual damaged or altered bases. TDG preferentially catalyzes the removal of thymine and uracil paired with guanine, and is also active on 5-fluorouracil (5-FU) paired with adenine or guanine. The rs4135113 single nucleotide polymorphism (SNP) of TDG is found in 10% of the global population. This coding SNP results in the alteration of Gly199 to Ser. Gly199 is part of a loop responsible for stabilizing the flipped abasic nucleotide in the active site pocket. Biochemical analyses indicate that G199S exhibits tighter binding to both its substrate and abasic product. The persistent accumulation of abasic sites in cells expressing G199S leads to the induction of double-strand breaks (DSBs). Cells expressing the G199S variant also activate a DNA damage response. When expressed in cells, G199S induces genomic instability and cellular transformation. Together, these results suggest that individuals harboring the G199S variant may have increased risk for developing cancer.

Indexed as

Germ CellsCatalytic DomainCell Transformation, NeoplasticDNA RepairGenomic InstabilityHumansPolymorphism, Single NucleotideStructure-Activity RelationshipSubstrate SpecificityThymine DNA GlycosylaseThymine DNA Glycosylase

Identifiers

PMID25375110
PMCPMC4222680

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.