Evidence map›Paper›PMID 25374564›Full record

ArticleFrontiers in microbiology2014

Regulatory role of tetR gene in a novel gene cluster of Acidovorax avenae subsp. avenae RS-1 under oxidative stress.

He Liu, Chun-Lan Yang, Meng-Yu Ge, Muhammad Ibrahim, Bin Li, Wen-Jun Zhao, Gong-You Chen, Bo Zhu, Guan-Lin Xie

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 37 citations in OpenAlex.

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  6. Frontiers in microbiology · 2019
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  9. Genome Sequence ofFrontiers in microbiology · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

He LiuState Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University Hangzhou, China ; Department of Plant Pathology, University of California Davis Davis, CA, USA.
Chun-Lan YangState Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University Hangzhou, China.
Meng-Yu GeState Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University Hangzhou, China.
Muhammad IbrahimState Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University Hangzhou, China ; Department of Biosciences, COMSATS Institute of Information Technology Sahiwal, Pakistan.
Bin LiState Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University Hangzhou, China.
Wen-Jun ZhaoChinese Academy of Inspection and Quarantine Beijing, China.
Gong-You ChenSchool of Agriculture and Biology, Shanghai Jiao Tong University Shanghai, China.
Bo ZhuState Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University Hangzhou, China.
Guan-Lin XieState Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang University Hangzhou, China.
Zhejiang University · CNChina National Rice Research Institute · CNChinese Academy of Inspection and Quarantine · CNShanghai Jiao Tong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acidovorax avenae subsp. avenae is the causal agent of bacterial brown stripe disease in rice. In this study, we characterized a novel horizontal transfer of a gene cluster, including tetR, on the chromosome of A. avenae subsp. avenae RS-1 by genome-wide analysis. TetR acted as a repressor in this gene cluster and the oxidative stress resistance was enhanced in tetR-deletion mutant strain. Electrophoretic mobility shift assay demonstrated that TetR regulator bound directly to the promoter of this gene cluster. Consistently, the results of quantitative real-time PCR also showed alterations in expression of associated genes. Moreover, the proteins affected by TetR under oxidative stress were revealed by comparing proteomic profiles of wild-type and mutant strains via 1D SDS-PAGE and LC-MS/MS analyses. Taken together, our results demonstrated that tetR gene in this novel gene cluster contributed to cell survival under oxidative stress, and TetR protein played an important regulatory role in growth kinetics, biofilm-forming capability, superoxide dismutase and catalase activity, and oxide detoxicating ability.

Indexed as

EMSAhorizontal gene transferoxidative stressproteome profilingrepressortetR

Identifiers

PMID25374564
PMCPMC4204640
OpenAlexW2155440517

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.