Evidence map›Paper›PMID 25374563›Full record

ArticleFrontiers in microbiology2014

Protein-tyrosine phosphorylation interaction network in Bacillus subtilis reveals new substrates, kinase activators and kinase cross-talk.

Lei Shi, Nathalie Pigeonneau, Magali Ventroux, Abderahmane Derouiche, Vladimir Bidnenko, Ivan Mijakovic, Marie-Françoise Noirot-Gros

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Connection between protein-tyrosine kinase inhibition and coping with oxidative stress inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Review
  3. Article
  4. Article
  5. Microorganisms · 2022
    Review
  6. Article
  7. ¡vIVA la DivIVA!Journal of bacteriology · 2019
    Review
  8. Conceptual Evolution of Cell Signaling.International journal of molecular sciences · 2019
    Review
  9. Multiple links connect central carbon metabolism to DNA replication initiation and elongation in Bacillus subtilis.DNA research : an international journal for rapid publication of reports on genes and genomes · 2018
    Article
  10. Phosphorylation of theFrontiers in microbiology · 2018
    Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Substrate Specificity of theFrontiers in microbiology · 2016
    Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Lei ShiInstitut National de la Recherche Agronomique, UMR1319 Micalis Jouy-en-Josas, France ; Systems and Synthetic Biology, Department of Chemical and Biological Engineering, Chalmers University of Technology Gothenburg, Sweden.
Nathalie PigeonneauInstitut National de la Recherche Agronomique, UMR1319 Micalis Jouy-en-Josas, France.
Magali VentrouxInstitut National de la Recherche Agronomique, UMR1319 Micalis Jouy-en-Josas, France.
Abderahmane DerouicheInstitut National de la Recherche Agronomique, UMR1319 Micalis Jouy-en-Josas, France ; Systems and Synthetic Biology, Department of Chemical and Biological Engineering, Chalmers University of Technology Gothenburg, Sweden.
Vladimir BidnenkoSystems and Synthetic Biology, Department of Chemical and Biological Engineering, Chalmers University of Technology Gothenburg, Sweden.
Ivan MijakovicInstitut National de la Recherche Agronomique, UMR1319 Micalis Jouy-en-Josas, France ; Systems and Synthetic Biology, Department of Chemical and Biological Engineering, Chalmers University of Technology Gothenburg, Sweden.
Marie-Françoise Noirot-GrosInstitut National de la Recherche Agronomique, UMR1319 Micalis Jouy-en-Josas, France.
Microbiologie de l’alimentation au service de la santé · FRChalmers University of Technology · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Signal transduction in eukaryotes is generally transmitted through phosphorylation cascades that involve a complex interplay of transmembrane receptors, protein kinases, phosphatases and their targets. Our previous work indicated that bacterial protein-tyrosine kinases and phosphatases may exhibit similar properties, since they act on many different substrates. To capture the complexity of this phosphorylation-based network, we performed a comprehensive interactome study focused on the protein-tyrosine kinases and phosphatases in the model bacterium Bacillus subtilis. The resulting network identified many potential new substrates of kinases and phosphatases, some of which were experimentally validated. Our study highlighted the role of tyrosine and serine/threonine kinases and phosphatases in DNA metabolism, transcriptional control and cell division. This interaction network reveals significant crosstalk among different classes of kinases. We found that tyrosine kinases can bind to several modulators, transmembrane or cytosolic, consistent with a branching of signaling pathways. Most particularly, we found that the division site regulator MinD can form a complex with the tyrosine kinase PtkA and modulate its activity in vitro. In vivo, it acts as a scaffold protein which anchors the kinase at the cell pole. This network highlighted a role of tyrosine phosphorylation in the spatial regulation of the Z-ring during cytokinesis.

Indexed as

bacterial cell divisionbacterial protein kinasebacterial signalingprotein phosphorylationprotein-protein network

Identifiers

PMID25374563
PMCPMC4205851
OpenAlexW2017197071

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.