Evidence map›Paper›PMID 25374113›Full record

ArticleNature communications2014

Pigment cell interactions and differential xanthophore recruitment underlying zebrafish stripe reiteration and Danio pattern evolution.

Larissa B Patterson, Emily J Bain, David M Parichy

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 109 citations in OpenAlex.

  1. Review
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  10. The hybrid history of zebrafish.G3 (Bethesda, Md.) · 2025
    Article
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  13. Science advances · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Larissa B PattersonDepartment of Biology, University of Washington, Seattle, Washington 98195, USA.
Emily J BainDepartment of Biology, University of Washington, Seattle, Washington 98195, USA.
David M ParichyDepartment of Biology, University of Washington, Seattle, Washington 98195, USA.
Seattle University · USUniversity of Washington · US

Funding

INTERDISCIPLINARY TRAINING IN DEVELOPMENTAL BIOLOGYT32HD007183 · NICHD · UNIVERSITY OF WASHINGTON · PI RAIBLE, DAVID W · 1985 to 2015
$5.7M
DEVELOPMENTAL BASES FOR PIGMENT CELL VARIATION IN DANIOR01GM062182 · NIGMS · UNIVERSITY OF WASHINGTON · PI PARICHY, DAVID M · 2001 to 2014
$3.8M
Melanocyte boundary interactions in development and neoplasiaR01GM096906 · NIGMS · UNIVERSITY OF WASHINGTON · PI PARICHY, DAVID M · 2011 to 2016
$2.2M
NICHD NIH HHS T32 HD007183NIGMS NIH HHS R01 GM062182NIGMS NIH HHS R01 GM096906
6 · The paper itself

Abstract

Fishes have diverse pigment patterns, yet mechanisms of pattern evolution remain poorly understood. In zebrafish, Danio rerio, pigment-cell autonomous interactions generate dark stripes of melanophores that alternate with light interstripes of xanthophores and iridophores. Here, we identify mechanisms underlying the evolution of a uniform pattern in D. albolineatus in which all three pigment cell classes are intermingled. We show that in this species xanthophores differentiate precociously over a wider area, and that cis regulatory evolution has increased expression of xanthogenic Colony Stimulating Factor-1 (Csf1). Expressing Csf1 similarly in D. rerio has cascading effects, driving the intermingling of all three pigment cell classes and resulting in the loss of stripes, as in D. albolineatus. Our results identify novel mechanisms of pattern development and illustrate how pattern diversity can be generated when a core network of pigment-cell autonomous interactions is coupled with changes in pigment cell differentiation.

Indexed as

Biological EvolutionAnimalsBody PatterningCell CommunicationCell DifferentiationFemaleGene Expression Regulation, DevelopmentalMacrophage Colony-Stimulating FactorMaleMelanocytesPhenotypePigmentationSignal TransductionSpecies SpecificityTime FactorsZebrafishMacrophage Colony-Stimulating Factor

Identifiers

PMID25374113
PMCPMC4224114
OpenAlexW2038032147

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.