Evidence map›Paper›PMID 25373780›Full record

ArticleDevelopmental cell2014

A genomic Multiprocess survey of machineries that control and link cell shape, microtubule organization, and cell-cycle progression.

Veronika Graml, Xenia Studera, Jonathan L D Lawson, Anatole Chessel, Marco Geymonat, Miriam Bortfeld-Miller, Thomas Walter, Laura Wagstaff, Eugenia Piddini, Rafael E Carazo Salas

Open access · bronzeAbstract read
In one paragraph

Article in Developmental cell, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
7.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular Link between DNA Damage Response and Microtubule Dynamics.International journal of molecular sciences · 2022
    Review
  4. Review
  5. Ends and middle: Global force balance and septum location in fission yeast.The European physical journal. E, Soft matter · 2020
    Article
  6. Article
  7. Systematic mapping of cell wall mechanics in the regulation of cell morphogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Sharing and reusing cell image data.Molecular biology of the cell · 2018
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Visualizing quantitative microscopy data: History and challenges.Critical reviews in biochemistry and molecular biology · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Veronika Graml *The Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QN, United Kingdom.
Xenia Studera *The Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QN, United Kingdom.
Jonathan L D Lawson *The Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QN, United Kingdom.
Anatole Chessel *The Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QN, United Kingdom.
Marco GeymonatThe Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QN, United Kingdom.
Miriam Bortfeld-MillerInstitute of Biochemistry, ETH Zurich, Schafmattstrasse 18, HPM G16.2, Zurich, CH-8093, Switzerland.
Thomas WalterInstitut Curie, Centre for Computational Biology, Centre de Recherche Unité 900, 26 Rue d'Ulm, 75248 Paris, France.
Laura WagstaffThe Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QN, United Kingdom.
Eugenia PiddiniThe Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QN, United Kingdom.
Rafael E Carazo SalasThe Gurdon Institute, University of Cambridge, Tennis Court Road, Cambridge, CB2 1QN, United Kingdom.
University of Cambridge · GBWellcome/Cancer Research UK Gurdon Institute · GBETH Zurich · CHInstitut Curie · FR

Funding

Biotechnology and Biological Sciences Research Council BB/K006320/1Cancer Research UK 12460Cancer Research UK A12460Wellcome Trust 092096Wellcome Trust UF0905080
6 · The paper itself

Abstract

Understanding cells as integrated systems requires that we systematically decipher how single genes affect multiple biological processes and how processes are functionally linked. Here, we used multiprocess phenotypic profiling, combining high-resolution 3D confocal microscopy and multiparametric image analysis, to simultaneously survey the fission yeast genome with respect to three key cellular processes: cell shape, microtubule organization, and cell-cycle progression. We identify, validate, and functionally annotate 262 genes controlling specific aspects of those processes. Of these, 62% had not been linked to these processes before and 35% are implicated in multiple processes. Importantly, we identify a conserved role for DNA-damage responses in controlling microtubule stability. In addition, we investigate how the processes are functionally linked. We show unexpectedly that disruption of cell-cycle progression does not necessarily affect cell size control and that distinct aspects of cell shape regulate microtubules and vice versa, identifying important systems-level links across these processes.

Indexed as

Cell CycleCell Cycle ProteinsCell DivisionCell ShapeDNA DamageDNA RepairFungal ProteinsGene Knockout TechniquesImaging, Three-DimensionalMicroscopy, ConfocalMicrotubulesProtein TransportSchizosaccharomycesSchizosaccharomyces pombe ProteinsTranscription, GeneticCell Cycle ProteinsFungal ProteinsSchizosaccharomyces pombe Proteins

Identifiers

PMID25373780
PMCPMC4648281
OpenAlexW1989161898

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.